Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04139 ATGAATGCGGAAGAGGTTGGTGGTAATGAGGTTCAGGAGGAACATTTGCCTGAAGGAGAACCAGGGTTTGACTTGAGCGCGGATGATATTTTGAACCAAGTTTGGAAAAGTGTGGAAGATGCGTATGAGTTTTATCGAAGGTATGGAAGAGTCAACAGATTTGGGGTACGGAAAGGGGACTCAGGTAAAGATAGCCACAGTAATGTTGTGAGATATCAATTTTTTTGTAACAAGGAAGGATTGAGGGAAATCAAGCACTATAACAGGATTGATAGGCAGCGGGGACACAAACCAGAAACACGGACTGGCTGCAAAGCAATGCTATCAATATACTTGGAGAAGAGTGAGCAGAAATGGAAGGTTAGGAAGGTAGTACTGGATCACAACCATGACCTAGCACCTGTTGGGATGTCTTACCTGATTCGCAGTCATCGCAAAATGACGGACGCGGCAAAGGCTCACATTGACGGGATGCATGCGTATGGAATTGGGACGTCGAAAATCTTGGGTCACATGGCTGGTATGTCAGGTGGATACTCTTTGTTGGGATTTTTGAAAAAGGATGCGTACAACTACGCGGACAAGATGAGGCGGTCACGAATAGCTGATGGTGATGCGAATGCAACGTTGGTTTACCTTGAGGGAAAGGCTGTTGTTGACCCTATGTATGTTGCACGCTACAACCTCACAAAAGATGAAAGGCTTGGTAACATGGTTTGGGCTGATGGGAATAGCCGGTCTGATTTTCAGTGTTTTGGAGATGTCTTAGCGTTTGACTCCACTTATAGGAAAAATAGATACAAACGTCCAGTAGTGATTTTTTCAGGCTCAAACAACCATAAGCAAACTACTATTTTTGGTTTTGGGTTGTTGATTGATGAAACTGTATCGTCGTATACGTGGATGTTACAGAATTTGCTAGAGGTTATGTGCCAAAAGAAACCTTGTGTAGTTGTTACTGACGGGGACAAAGCAATGATAAAAGCTGTGAAGTCGGTTTTACCTGAGGCAACCCATCATTTGTGTGCGTGGCATGTGGAAAAAAATGTGACATCAAATGTAAAAGACGAACGCCTCCGCAGTTTGTTCAAGCGTTGGTTGTACATGGACATGGAGGTTAATGAATTCAAAGAGGATTGGGCTGCAGCAATTGAGGAGTTTGGGCTGCATGACAGTAGTTGGGCAAGGCACATGCATGAGAAGCGAAAGCTATGGGTAAAGGCGTATTTACGTGACAAGTTTTGCGCCAGATTCCAGACTACGTCGCGATGTGAGGGAATAAATGCTGTGGTTAACAAGTTTTCGAAGTCAAGCCATACTATCCTCGAGTTAGTGCAAAATCTAGAGCTAGTCGTCCATGAATATCGGAACAAAGAGATGTTGCTACAATTTAACTCCATTTACACCAATCCGGTTATGACCACATGTTTGAGGTCAATAGAGATAGCTGCTGCTAGTGTTTATACTCGAGAGTTGTTCGCATATGTTAGGAAAGAGATTGAAGGAGCTGGAGCAGTTAATCTACTTACGAAAAAACGGTGCTTGAATACAACCGTTTATTATCTAGAGGAATATGAGAAACCTGATGTTCAGGTAATGGCCGCCTTCGGGAGAAGTACTGGAAAACTCGACTGTCAATGCTTTTTTTGGGAAAAGAACGGGTACCCATGCAGGCATATGTTCTTTATGATGAAAGCAGCGCATCTGCAGGAAATACCTGAAAGATTGGTCCTGCGACGATGGAGAAAAGATGCCAAAGATATAGATCAATATGGATATGAACGGGACACAAGGGGGACGAAGAAGGTGGTACGGGATCCCAAGGTTGCGAACCCTAAGGGCGCCCCTCGACTGGCCAAACAAAGGCAATTAGGCAAGAGAAGGCGATGTGCTAACTGCAAGCACGTAAGCCATACGAAAAGAAAATGTCCCCAGGATAGGGGGAAGAAGTCGTCAGCAGCTAACGATGCGGACCAGCACGGTGTGGCCGGAGCAGAATGCCAAGATGATTCATCTAGGATGACACCTGCGAGTTTCAAGAGGGAACCTGGCCATGGAAATGCTGGAAATTATGCACGGAACCTAGATGACTTAAGGAGACAGTTCGCTGATTCGACCTCCGGCAACTACGTAGGAAACAATGCGAAGGCAGGATGCACCTTCAATGACGATTGGGCAAACGAGGTTAGGATGCCTGCATGTGTATATGTATCATCGTTAAAAGCTTGCGATGATCCAAGTATTTAG 2247 0.449 MNAEEVGGNEVQEEHLPEGEPGFDLSADDILNQVWKSVEDAYEFYRRYGRVNRFGVRKGDSGKDSHSNVVRYQFFCNKEGLREIKHYNRIDRQRGHKPETRTGCKAMLSIYLEKSEQKWKVRKVVLDHNHDLAPVGMSYLIRSHRKMTDAAKAHIDGMHAYGIGTSKILGHMAGMSGGYSLLGFLKKDAYNYADKMRRSRIADGDANATLVYLEGKAVVDPMYVARYNLTKDERLGNMVWADGNSRSDFQCFGDVLAFDSTYRKNRYKRPVVIFSGSNNHKQTTIFGFGLLIDETVSSYTWMLQNLLEVMCQKKPCVVVTDGDKAMIKAVKSVLPEATHHLCAWHVEKNVTSNVKDERLRSLFKRWLYMDMEVNEFKEDWAAAIEEFGLHDSSWARHMHEKRKLWVKAYLRDKFCARFQTTSRCEGINAVVNKFSKSSHTILELVQNLELVVHEYRNKEMLLQFNSIYTNPVMTTCLRSIEIAAASVYTRELFAYVRKEIEGAGAVNLLTKKRCLNTTVYYLEEYEKPDVQVMAAFGRSTGKLDCQCFFWEKNGYPCRHMFFMMKAAHLQEIPERLVLRRWRKDAKDIDQYGYERDTRGTKKVVRDPKVANPKGAPRLAKQRQLGKRRRCANCKHVSHTKRKCPQDRGKKSSAANDADQHGVAGAECQDDSSRMTPASFKREPGHGNAGNYARNLDDLRRQFADSTSGNYVGNNAKAGCTFNDDWANEVRMPACVYVSSLKACDDPSI 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04139 748 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 591 IPR031052 GO:0006355
Aip03g04139 748 Pfam FAR1 DNA-binding domain 43 133 IPR004330 -
Aip03g04139 748 MobiDBLite consensus disorder prediction 620 645 - -
Aip03g04139 748 PANTHER OS02G0262500 PROTEIN 29 591 - -
Aip03g04139 748 MobiDBLite consensus disorder prediction 599 690 - -
Aip03g04139 748 Pfam SWIM zinc finger 542 560 IPR007527 GO:0008270
Aip03g04139 748 ProSiteProfiles Zinc finger SWIM-type profile. 530 568 IPR007527 GO:0008270
Aip03g04139 748 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g04139 748 MobiDBLite consensus disorder prediction 8 22 - -
Aip03g04139 748 Pfam MULE transposase domain 255 349 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04139 Aip-Chr3 125246226 125248722 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip03g04139 MULE 2.7e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04139 - - aip:107633775 1546.95