Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04128 ATGAGTGATTCTACAGTTTTAGAGTGGCTTAGGCCCTTTGTTGAGGCCAAAGCTTGGGACTTTGTGGTTGTTTGGAAATATGGGGATGACCCTACTAGGTTCTTCATTGAGTGGCTGGGTTGTTGCTGTAGTGGGAGCTGTGGTGAAAGCATTGAGAATGCAAAGAAGCTCAAAGATGAAGAAATGGATGAAAAACAGAACGACATGGATTCTTCTTCCATTTGCAAGGATGCACATTTTCAGCATCCAATTAGAACCAAGGCTTGTAAGGCTCTTTCTCAGCTTCCTTTTGCAATGTCTCTCTATTCTGGTGTCCATGGAGAGGTTGCAATATCGCAGCAACCAAAATGGCTTACTCATGGAGAGGAAATTGGAACACAAGTTTTGATCCCTGTTGTTGGTGGTCTTGTTGAGCTCTTCACGACAAAGCTTGTTCCAAAAGACAATAACATCTTAGAGTTCATAAGAGCACATTGCTATGTTTCATTGAAGCAAGAAGCTATATGTGCACAGCACCACACCGATGTGAACTTCAGTGAAAATCTGTCATCAGAAGAACAATACACACAGAGCTCGCCACAACTTGCGTCAACTTTAACTGATGGTGTCCATCTTCTTGCAGCAAATTGGTGCAAATCGGATCCTTACATTGAAGAACCTTCCAGTGGATCTAATCCTTCAAGCGAATACACATCATTTGATTCGAAATTTGTCTGCTTGACTCACCATGAATATCTGGGTGAGTCGGTTAAATTATCACCTACCTGCAAAACCGAAAGGCCTAAGTACAATGAAACTTCAGGGAAGCAGCAAGGAACTTTGAGTTCCTATTGTGGCAATGGCAAAAGAAATAAAACAAAATCGGTCAGGGTGCCTCCGAAGGAAGGTTACCATGCTAAAAATCTTGCCACAGAGAGGAGAAGAAGAAACAAGATTAAAAATGGCCTTTTCACTTTAAGGTCTCTAGTCCCAAAGATAACCAAGAAAAAATCGGTCATGGATAGAGCATCAATTCTAGCAGATGCAATTGACTACATTAAGGAACTGCATGGACAAGTAGAAGATCTAAAAGATGAGGTCAGGAATTTGGAAGTAGAAGACTGTGAGAAGAACACACTGCAATCAATTATGCCAAGTAAAGAACAAGGAGAAAACAGAACTCTCCTTACTGAGCTCAATCAAAGAAGTTCTAATTCCACTAAACAGATAGAGATGAAGATGCAAACAGAAGTGAATCATATAAGCAGGACAGAGTACTTGCTTAAGGTATGCTGGGAGCAGAAGCCAGGTGGGTTTTCAAGGTTGATGGAAGCTATAAATTCATTTGGATTTCAGGTGGAAACTGCCAATATGACCACAATTGACGGAAAGGCTCAGATCATTCTAACAGTTGAGGCAGCCAAGGAGGGAATTCACCCAACTAAGCTGAAGGATTTTTTGACAGAGCAAACAGGTTGA 1458 0.4136 MSDSTVLEWLRPFVEAKAWDFVVVWKYGDDPTRFFIEWLGCCCSGSCGESIENAKKLKDEEMDEKQNDMDSSSICKDAHFQHPIRTKACKALSQLPFAMSLYSGVHGEVAISQQPKWLTHGEEIGTQVLIPVVGGLVELFTTKLVPKDNNILEFIRAHCYVSLKQEAICAQHHTDVNFSENLSSEEQYTQSSPQLASTLTDGVHLLAANWCKSDPYIEEPSSGSNPSSEYTSFDSKFVCLTHHEYLGESVKLSPTCKTERPKYNETSGKQQGTLSSYCGNGKRNKTKSVRVPPKEGYHAKNLATERRRRNKIKNGLFTLRSLVPKITKKKSVMDRASILADAIDYIKELHGQVEDLKDEVRNLEVEDCEKNTLQSIMPSKEQGENRTLLTELNQRSSNSTKQIEMKMQTEVNHISRTEYLLKVCWEQKPGGFSRLMEAINSFGFQVETANMTTIDGKAQIILTVEAAKEGIHPTKLKDFLTEQTG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04128 485 Gene3D - 292 367 IPR036638 GO:0046983
Aip03g04128 485 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 69 484 - -
Aip03g04128 485 ProSiteProfiles ACT domain profile. 420 485 IPR002912 -
Aip03g04128 485 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 157 IPR025610 -
Aip03g04128 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 349 IPR011598 GO:0046983
Aip03g04128 485 MobiDBLite consensus disorder prediction 259 283 - -
Aip03g04128 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 366 IPR036638 GO:0046983
Aip03g04128 485 Coils Coil 339 366 - -
Aip03g04128 485 PANTHER TRANSCRIPTION FACTOR BHLH90 69 484 - -
Aip03g04128 485 MobiDBLite consensus disorder prediction 258 289 - -
Aip03g04128 485 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Aip03g04128 485 SMART finulus 302 355 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04128 Aip-Chr3 125050006 125054239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04128 99 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 26.718 1.59e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g04128 bHLH-MYC_N 3.5e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04128 - - gmx:100807261 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04128 03 125050006 125054239 Aip03g04128 03 125050006 125054239 ECH