Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04116 ATGGCTGGCTATCCTCGAAGTCCTATTCAGCAAGGGGGGTGGGATACGACGACTGAGATGGAGGCCTTGCCGAATAGGGTGGAAGAGAGGCAGGGGGTAAAGCTAAAGGAAAGGGCTGACTGTGTAAGAGATACGTCAGACAGAACTCAATCCTGGGAGTATGATAGGGATCGGGTGCTGGCTGTGGGGGAGATCACAAGCAAGGTTCGGGTGGGAGTGAAGGCTAATAAGGCTGGGGACATGTGGAATGGATCTGGGAGCCATGGCGGCGCAGGAGTGCTCATTGCAAGGAGAAGGCAGGAGGCTTGCGGCTCCCTCGGATCGGAGAACGCGTCACACCCATGGGGAGTGGTTGGCTACCCCGCGATGTCCTCCATGGTGCTGGCCGGTAATGGAGCGCTGGTGGCTGATGGCGACGAAGGCCAAGCGCCGTCAACGACCCGTGATGGGGGTGGGGGCGTCAGGCTGGGGTCGATGGGACTGCTACTATGCAGTTCGGACACGAGGCCTATGACGGTTGGGTTGGAAAGGGATCGGTCAGGAAAGGGGGAAGAGGAGCAAGGGTCTGGGTTTCGTGGAATTGGTGTGAAGGGGACAATGGAGGTGGATGGTGGGGGGGTGGCGCTCCACTCTAGTGGGGAAGAGGAGTTGGCGGTGGCTTGTGCTGGAAACAGTGCTAGGGGCTGTAAGGGAATGGCGTGTTGCCAGATGAGAGGGGAAGGAAGTTGGCTGGGAGGCCCAAGTGTGGCGACGTCATGGAATATGGATGGATTAGGCGAGGAGGGGAATGTTTCGGAAGGGAAGGGTATTGCGGCAGAGAGTGGCATAAGGGGCTCTATGGGGAATGTAGATCCTGCACCGGGGGGTATGGGGGAAGCTTTAACGGATCTGCAGGATGACCCCTGTGATGAAGCAAGTGAAGCTGAGCCGGAAACGTCCGaaaccagatgggcagctgaaatgcaagaaaaccgggaagtgtggaagcttgcagtggaatctggagctgtgcaCATGTCATCAAGTAGAAGACTAGTGAGGCATGTGTTTGATGTTCCTGAAGAGATATGTTACGTGCAATGTGGATTGTGTTCATCCATTTTAGTGGTGAGTGTGCCATGCACCAGCATGTCAATGGCGGTTCTCAGTGTCAGATGCGGCCACTGCACAACCGTTCTCTCTGTCAACATGTTCAAACCTTCCTTTCTTCCTTCTCTAGTAACCCCTTCCAATCAGCTAAATATTGAGGATGGCAACAAGATTAGCACTTTGAACACTCATAATAATTATAATGATTGTGAGGAAGCCAATAATGATGTAACTACTCCATTTACAACTGATTCTGCTCCCAATAAACCACCAGAAAAGAAACAGCGAACACCGTCGGCTTATAACTGTTTCATCAAAGAAGAGATTAAGAGGCTTAAAGCTGAAAACCCTGAAATGGCCCACAAGGAAGCTTTCAGTACTGCTGCAAAAAATTGGGCCAATTTCCCCCCATCTGAGTATAGAAGAGGAGATGATGAAATTGACCAAGACCGCTCTACCCACACACCCCAACTTGCTAATAATAATAAGGTAAGTTTGAAGGTGGATATTACAATGAAGACTTTATCATTGTCTTCATGTGAAAATATTTCCTTTTGA 1647 0.49 MAGYPRSPIQQGGWDTTTEMEALPNRVEERQGVKLKERADCVRDTSDRTQSWEYDRDRVLAVGEITSKVRVGVKANKAGDMWNGSGSHGGAGVLIARRRQEACGSLGSENASHPWGVVGYPAMSSMVLAGNGALVADGDEGQAPSTTRDGGGGVRLGSMGLLLCSSDTRPMTVGLERDRSGKGEEEQGSGFRGIGVKGTMEVDGGGVALHSSGEEELAVACAGNSARGCKGMACCQMRGEGSWLGGPSVATSWNMDGLGEEGNVSEGKGIAAESGIRGSMGNVDPAPGGMGEALTDLQDDPCDEASEAEPETSETRWAAEMQENREVWKLAVESGAVHMSSSRRLVRHVFDVPEEICYVQCGLCSSILVVSVPCTSMSMAVLSVRCGHCTTVLSVNMFKPSFLPSLVTPSNQLNIEDGNKISTLNTHNNYNDCEEANNDVTTPFTTDSAPNKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSEYRRGDDEIDQDRSTHTPQLANNNKVSLKVDITMKTLSLSSCENISF 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04116 548 CDD HMGB-UBF_HMG-box 459 502 - -
Aip03g04116 548 PANTHER PROTEIN YABBY 6-RELATED 339 513 IPR006780 GO:0007275
Aip03g04116 548 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 457 525 IPR009071 -
Aip03g04116 548 SUPERFAMILY HMG-box 447 519 IPR036910 -
Aip03g04116 548 MobiDBLite consensus disorder prediction 1 31 - -
Aip03g04116 548 Pfam YABBY protein 353 500 IPR006780 GO:0007275
Aip03g04116 548 Gene3D High mobility group box domain 443 526 IPR036910 -
Aip03g04116 548 MobiDBLite consensus disorder prediction 435 451 - -
Aip03g04116 548 MobiDBLite consensus disorder prediction 172 197 - -
Aip03g04116 548 PANTHER AXIAL REGULATOR YABBY 4 339 513 - -
Aip03g04116 548 MobiDBLite consensus disorder prediction 172 186 - -
Aip03g04116 548 MobiDBLite consensus disorder prediction 435 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04116 Aip-Chr3 124939553 124948364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04116 346 506 C2C2-YABBY Transcription Factor Family AT1G23420 49.180 3.01e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aip03g04116 YABBY 3.4e-52 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04116 K25796 - gmx:100804172 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04116 03 124939553 124948364 Aip03g04116 03 124939553 124948364 ECH