Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04101 ATGGATTCAGCACCCTTTGTGGTTGTCCTCCTTCTCTTGTTCCTCTGTTGCTTATCAACTCCTTCGCTCTCGGACCCCAGAGCCACAAGGGCGGCCTTGCTCTGCACCAACAGGACCGAACCTGCTCCTTCCCGTCAACTCTTCGTATCAAACTTCCTTGCTGCCATGGACGCACTTACCCCTCTCATCTCAACTAAAAGGTACGGAGCAGTTATCAACGGGACTCGCAACTTGACGGTCTACGCCTTCGGCCAGTGCATGAACGATCTGTCTCAGCAAGACTGCAACATGTGCTTCGCCCAGTGCAAGACACAGATCCTCACCTGCCTTCCCTTCCAGAAAGGGACACGTGGCGGCTCTCTCTTCTTCGATGGCTGCTACCTCAGGTACGATGATTACAACTTCTTCAACGAGAGCGTCACCGATCGAGACACCTCGGTATGTAACGGCACCAGTAACAGAAACGGCGTCGTTTACAAGCGCAATGCTTTGGAGTTGGTGAGCAACTTGAGTCATCTGGCGCCCAAGAACGGTGGCTTCTTCGTTGGCTCATTCAGCCGCAAGAATGTGAGTGTTTATGGATTGGCTCAGTGCTGGAAATTTGTTAATGCAACTTCCTGTAAGAGCTGTTTGGCTGATGCTGTAACTAGAATCGATTCGTGTCCTCCCAAAGAAGAAGGGAGGGCGATGAATACTGGTTGTTACATGAGGTATTCCTCACACAAGTTTTATTACAATTCAACCACTGTTGCTTCTGCTTCTGGGAATCATGGACGGCGCAAGCTAGCTATAATTCTGGCTGCATCTTGTGCTGCCCTGGCTCTTGTTCTGGCTGCTGCAACATTTGTTTACTTTGCAAGGAAGAATCTACTCAAGAGAAGAAGAGATAGGCGACAGTTTGGTGCACTGTTGGACAGAGTGAACAGGTCCAAGCTAAATATGGCATATGAAATCCTTGAAAAAGCTACAAATTACTTCAATGATGCAAATAAACTAGGACAAGGTGGATCAGGCACAGTTTATAAAGGAGTTCTGCCTGATGGAAATGTTGTGGCCATAAAAAGGCTTAGCTTTAACACAACACAATGGGCAGATCTTTTCTTCAATGAGGTCAATTTGATAAGTGGTGTTCATCACAAGAATCTTGTAAAGCTTTTGGGATGCAGCATTACAGGACCCGAAAGCCTTTTGGTTTATGAATATGTGCCTAACCAGAGTCTCCATGATCACTTTTCAGCTAGGAGGATTTCGCAGCCATTGACTTGGGAAGTGAGGTACAAGATCATACTAGGAATTGCTGAGGGCCTGGCCTATCTTCATGAGGAGTCTCCTGTTAGAATCATTCATAGAGACATAAAATTAAGCAACATTCTGCTAGACAATGACTTCACACCGAAGATTGTGGATTTTGGTCTTGCTAGATTGTTTCCGGAAGATAAGTCTCACCTTAGCACAGCCATTGCTGGCACACTGTAA 1476 0.4654 MDSAPFVVVLLLLFLCCLSTPSLSDPRATRAALLCTNRTEPAPSRQLFVSNFLAAMDALTPLISTKRYGAVINGTRNLTVYAFGQCMNDLSQQDCNMCFAQCKTQILTCLPFQKGTRGGSLFFDGCYLRYDDYNFFNESVTDRDTSVCNGTSNRNGVVYKRNALELVSNLSHLAPKNGGFFVGSFSRKNVSVYGLAQCWKFVNATSCKSCLADAVTRIDSCPPKEEGRAMNTGCYMRYSSHKFYYNSTTVASASGNHGRRKLAIILAASCAALALVLAAATFVYFARKNLLKRRRDRRQFGALLDRVNRSKLNMAYEILEKATNYFNDANKLGQGGSGTVYKGVLPDGNVVAIKRLSFNTTQWADLFFNEVNLISGVHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHFSARRISQPLTWEVRYKIILGIAEGLAYLHEESPVRIIHRDIKLSNILLDNDFTPKIVDFGLARLFPEDKSHLSTAIAGTL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04101 491 SMART serkin_6 326 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04101 491 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Aip03g04101 491 Pfam Protein kinase domain 327 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04101 491 Gene3D Transferase(Phosphotransferase) domain 1 402 491 - -
Aip03g04101 491 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 19 489 - -
Aip03g04101 491 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 489 - -
Aip03g04101 491 Pfam Salt stress response/antifungal 148 240 IPR002902 -
Aip03g04101 491 Pfam Salt stress response/antifungal 42 133 IPR002902 -
Aip03g04101 491 Gene3D Phosphorylase Kinase; domain 1 286 401 - -
Aip03g04101 491 ProSiteProfiles Gnk2-homologous domain profile. 141 243 IPR002902 -
Aip03g04101 491 ProSiteProfiles Gnk2-homologous domain profile. 29 135 IPR002902 -
Aip03g04101 491 Gene3D - 141 243 IPR038408 -
Aip03g04101 491 Gene3D - 30 135 IPR038408 -
Aip03g04101 491 SUPERFAMILY Protein kinase-like (PK-like) 311 490 IPR011009 -
Aip03g04101 491 ProSiteProfiles Protein kinase domain profile. 326 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04101 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04101 Aip-Chr3 124747585 124749737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04101 20 491 Receptor kinase-like Gene Family AT1G70530 59.072 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip03g04101 Pkinase 6.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04101 - - gmx:100787359 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04101 03 124747585 124749737 Aip03g04101 03 124747585 124749737 ECH
Aip03g04101 03 124747585 124749737 Aip01g01880 01 96940569 96949378 ECH