Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04092 ATGTCTTCTTCTCTCAATAATCTTCTTTGTCTTCTCTTCTCTCTTTTGGCAACTTCATCTTCTATCAGAGTCTCTGCATTTCGTGTTTCAATGAAAACAACATACATGGACCCGCTAAGTTGCTCTGTAGAGGCTGCCAATACATGCACTGCCTCACTCTACCACATAACTCATGATGATTACAGCCTTGAAGAAATTGCATTTTATTACTCTGTTAACTCTTCACAAATCAAGCCTATTAAGTATGGAACAAGGCAAGATTACCTCATAACAGTTCCTTGTTCTTGCAAGAACACACAAAACCTCAGCGGGTATTTCTATCATACAACCTACAAAAATGTGAAGCATGGGGACATCTTTGTGGACATATCAGCTTCTGTTTACAGTGGACAAGCCATGCTGATCACCCAAAGTTTAATTCCAGGCAAAGATCTAGAAATAGACATTCCATGTGGGTGTTCCGAGGATGAGGGTCAAAGGGTTGTCACATATACAGTGCAGCAGAATGATACACCAGAAACAATTTCCCTTTTGCTTAATGCTACCCTGCCTGCCTTGCTGAGAATGAACAAGATTCTAGCTCAGAAACCTGGTTTCATAGATATTGGTTGGGTGCTCTTTGTTCCTTTGGAATTGAATGGGGTTCATGGGGTTCCTCCACAACCCCCAGAAAAAACGAAACGGAACTGGCCAATGATAGTTGGTATCGTCGTGGGAGTGCTGTTACTTTCAGTTATCATTATCACCATTCTCATAATTCTTTGGAGAAGGAGAGTCCATCAAATCACCAGAAATGATTCCACAGTTGTCTCTAAAAGATCATTTGTCAACAGAAATATTACCTTGCATAACTCCACCCTTTACAAAGAATATATGGGAGATGTAATGCAAATTGAATCAGAGAGGCCAGTGATATATGGTCTTGAGGAGATAGAAGAGGCTACAAATAACTTTGATGAAGCTCGAAAAATCGGAGTTGGCGGGTATGGGAGTGTTTATTTTGGAATCTTAGAGCAGAAGGAGGTTGCTGTGAAAAAGATGAGGTCTAATAAGACTAAGGAATTCTATGCGGAACTCAAGGCCTTGTGTAAGATCCATCATATCAACATTGTGGAGCTATTAGGATATGCCAGAGGAGAAGATCACCTCTATTTGGTGTATGAGTATGTTTCAAATGGATCTCTCAGTGAACATATTCATGATCCATTAGAGCAAGCAGGGCACCAACCTCTTTCTTGGAATGCAAGGGTTCAGATTGCACTCGATGCAGCAAGAGGTATTGAATACATACATGATCATACAAAAGCTCGATATGTGCATCGCGACATAAAGACTAGCAATATTCTCATTGATGAGAAGCTCAGAGCTAAGGTAGCAGATTTTGGACTTGCAATGCTGGTGGACAGAAGCAATGATGAAAATTTCATAGCAACAAGGCTTGTTGGAACACCAGGATACCTTCCACCCGAATCTGTGAAGGAGCTTCAGGTGACCCCCAAAACCGATGTGTTTGCATTTGGAGTGGTTCTAGCAGAACTGATAACAGGGAAACGTGCACTGTTTCGGGACAAGAACGAAGAAGGCACCAAAATGAAATCACTTATTTCACTTGTACATCAAATATTCCAAGATGCAGAGCCAGAGAATGGTCTAGAAGATGTGATAGATAAGAACCTTGAAGCAAACTATCCCATTGAATACGTGTTGAAGGTAGCAGAGATAGCAGGTCGGTGCTTGCAAGAAGATCCAGTAGAAAGGCCTGAAATGAGGGACTTGGTTGGAGCACTGTCACAGATAGTGATGAACTCCATAGAATGGGAAGCATCCCTTGGTGGAAACAGCCAAGTCTTCAGTGGTGTCTTTACTGGAAGATGA 1875 0.416 MSSSLNNLLCLLFSLLATSSSIRVSAFRVSMKTTYMDPLSCSVEAANTCTASLYHITHDDYSLEEIAFYYSVNSSQIKPIKYGTRQDYLITVPCSCKNTQNLSGYFYHTTYKNVKHGDIFVDISASVYSGQAMLITQSLIPGKDLEIDIPCGCSEDEGQRVVTYTVQQNDTPETISLLLNATLPALLRMNKILAQKPGFIDIGWVLFVPLELNGVHGVPPQPPEKTKRNWPMIVGIVVGVLLLSVIIITILIILWRRRVHQITRNDSTVVSKRSFVNRNITLHNSTLYKEYMGDVMQIESERPVIYGLEEIEEATNNFDEARKIGVGGYGSVYFGILEQKEVAVKKMRSNKTKEFYAELKALCKIHHINIVELLGYARGEDHLYLVYEYVSNGSLSEHIHDPLEQAGHQPLSWNARVQIALDAARGIEYIHDHTKARYVHRDIKTSNILIDEKLRAKVADFGLAMLVDRSNDENFIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLAELITGKRALFRDKNEEGTKMKSLISLVHQIFQDAEPENGLEDVIDKNLEANYPIEYVLKVAEIAGRCLQEDPVERPEMRDLVGALSQIVMNSIEWEASLGGNSQVFSGVFTGR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04092 624 Gene3D Transferase(Phosphotransferase) domain 1 390 610 - -
Aip03g04092 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 22 624 IPR044812 GO:0019199|GO:0045087
Aip03g04092 624 ProSiteProfiles Protein kinase domain profile. 318 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04092 624 Pfam Protein kinase domain 319 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04092 624 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Aip03g04092 624 SMART serkin_6 318 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04092 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Aip03g04092 624 Gene3D Phosphorylase Kinase; domain 1 296 389 - -
Aip03g04092 624 SUPERFAMILY Protein kinase-like (PK-like) 304 600 IPR011009 -
Aip03g04092 624 Pfam LysM domain 164 209 IPR018392 -
Aip03g04092 624 ProSiteProfiles LysM domain profile. 162 208 IPR018392 -
Aip03g04092 624 SUPERFAMILY LysM domain 162 209 IPR036779 -
Aip03g04092 624 SMART LysM_2 163 209 IPR018392 -
Aip03g04092 624 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 22 624 - -
Aip03g04092 624 Gene3D LysM domain 155 214 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04092 Aip-Chr3 124636387 124639342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04092 292 624 Receptor kinase-like Gene Family AT1G51940 50.888 8.28e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aip03g04092 Pkinase 5.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04092 - - gmx:100791718 764.607