Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04075 ATGGAGTTCGAGGAAGACTTCACCATCCCCCCACCACCCAGTTACGCTGACTCAGTTCCCAACCCTTCGCGTGTCAAAATGCCGACTAACCCACCGCCACCACCAGCCATGCCGCGAAACACCGGAAAGGGGAGGTACATGGAGTGTCTCAAGAACCACGCGCTCGCCCTCGGAGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCCGCTGGAGCTGACGGCACCCTCGACGCACTAAACTGCGCTGCCTGCAACTGTCACCGCAACTTCCACCGCAAGGAAACCGTTGCCGGAGATGCTTTCTTGCTACCTCACCACCACTACAATCCTTTCCATAACCACCGCCACCACCAAGCGTTTCCGCAGTTCGCGGCGTGTTACCGCGCTCAGGGAGCTGGATACCTCCACGTGTCAGGACATCAAAGAGGAGGCAGTACCCCGACTCTGGCTCTGCCGTCGATCTCCGGCGGCGGCGGTGGTACCACACAGAGTACGAGGGACGATCACGAGGATGGTTCGGAACCTAGTGGCGGCGGCGGTGTAGGTTCGGCGTCGAAGAAGAGGTTCAGAACGAAGTTCAGTCCGGAGCAGAAGGAAAAGATGACGGTGTTCGCGGAGAGCGTAGGGTGGAAGCTTCAGAAGCATGATGAGGTGGCGGTTCAGGGGTTCTGCGATGAGGTTGGAGTGAAGCGTAACGTTCTCAAGGTTTGGATGCATAACCACAAGAACACCCTCGCTATCAAGAAGCCCTAG 756 0.5886 MEFEEDFTIPPPPSYADSVPNPSRVKMPTNPPPPPAMPRNTGKGRYMECLKNHALALGGHALDGCGEFMPAGADGTLDALNCAACNCHRNFHRKETVAGDAFLLPHHHYNPFHNHRHHQAFPQFAACYRAQGAGYLHVSGHQRGGSTPTLALPSISGGGGGTTQSTRDDHEDGSEPSGGGGVGSASKKRFRTKFSPEQKEKMTVFAESVGWKLQKHDEVAVQGFCDEVGVKRNVLKVWMHNHKNTLAIKKP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04075 251 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Aip03g04075 251 MobiDBLite consensus disorder prediction 1 41 - -
Aip03g04075 251 MobiDBLite consensus disorder prediction 142 164 - -
Aip03g04075 251 Gene3D - 172 248 - -
Aip03g04075 251 MobiDBLite consensus disorder prediction 25 39 - -
Aip03g04075 251 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 187 244 IPR006455 -
Aip03g04075 251 MobiDBLite consensus disorder prediction 139 195 - -
Aip03g04075 251 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Aip03g04075 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 247 - -
Aip03g04075 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 36 247 - -
Aip03g04075 251 SUPERFAMILY Homeodomain-like 175 245 IPR009057 -
Aip03g04075 251 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04075 Aip-Chr3 124344908 124345900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04075 42 246 ZF-HD Transcription Factor Family AT4G24660 49.758 1.53e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip03g04075 ZF-HD_dimer 5.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04075 - - lja:Lj0g3v0229739.1 255.373