Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04062 ATGCACTCTCACTCTCTCCTTTCAATGGAAACGCTCACCACCTCCTCCTCCATCTACCATCACTCTCTACCTCCTCCTCCTCCTCCTCCTCATTACTACTTCCTCTACGCCAACGGGACCACTGACCTCAAGCCTGAGGGACTCGACGGTACTTCCCAACTGGATCATAACATCATGCCCCAACAACCTTCTTTCTTCGTCAACCCAAACCTTCAGCCACCACAACCCCTCCTGCCCAAGCTCGAATATTTCTTCCAAACCGACACAAATGATGATGATGATTCCTCTTCCCTCACCCAAGATCTGAAAGCGCTTGCTGCTGACGCTGCCTTCCTAGCTTTCTCCTCTGCCAATTCGGTCTCTCAGGTGCTGGATGCTCACTCATCCCGGAACGATGACTTCGCGTTCTCCGCTAGTGGAGGCGGTAGCTCCTCCAACTCCAAGAAGGTTGTTGGTGATACATTTGGCCAGCGAACTTCAATATACAGAGGTGTTACCAGACACCGATGGACGGGACGATACGAAGCTCACCTGTGGGATAATAGCTGCCGCCGAGAGGGTCAAGCCAGGAAAGGCCGTCAAGTAAAATGTCATGGTTTGTCAGGTGGATATGACAAGGAAGAAAAGGCCGCAAGAGCCTATGACTTGGCAGCTCTAAAGTACTGGGGCCCCACAGCTACCACTAACTTCCCTGTTTCTAATTATATAAAGGAATTGGAAGAGATGAAAGATGTGGGGAAGCTTGAATTTATTGCATCACTACGAAGGAGAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGGGGTGTTACAAGGTTATTTCCAAATTCCAATCTTCGAATTAGCAATTCAACATGTTATTGA 867 0.4902 MHSHSLLSMETLTTSSSIYHHSLPPPPPPPHYYFLYANGTTDLKPEGLDGTSQLDHNIMPQQPSFFVNPNLQPPQPLLPKLEYFFQTDTNDDDDSSSLTQDLKALAADAAFLAFSSANSVSQVLDAHSSRNDDFAFSASGGGSSSNSKKVVGDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVKCHGLSGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYIKELEEMKDVGKLEFIASLRRRSSGFSRGASIYRGVTRLFPNSNLRISNSTCY 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04062 288 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 119 274 - -
Aip03g04062 288 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 119 274 - -
Aip03g04062 288 CDD AP2 160 233 IPR001471 GO:0003700|GO:0006355
Aip03g04062 288 PRINTS Ethylene responsive element binding protein signature 213 233 IPR001471 GO:0003700|GO:0006355
Aip03g04062 288 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Aip03g04062 288 SUPERFAMILY DNA-binding domain 160 233 IPR016177 GO:0003677
Aip03g04062 288 Pfam AP2 domain 161 223 IPR001471 GO:0003700|GO:0006355
Aip03g04062 288 ProSiteProfiles AP2/ERF domain profile. 161 231 IPR001471 GO:0003700|GO:0006355
Aip03g04062 288 SMART rav1_2 161 237 IPR001471 GO:0003700|GO:0006355
Aip03g04062 288 Gene3D AP2/ERF domain 161 233 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04062 Aip-Chr3 124145325 124148804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04062 101 273 AP2-EREBP Transcription Factor Family AT5G57390 66.474 1.97e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip03g04062 AP2 1.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04062 K09285 - sspl:121787628 227.254