Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04060 ATGCAAGAATTTAGGGGTAAGTTGCAGAAGGTGATAAAGAAAGCGAATCCAGATATAGATTGGGGGGTTTTCAATAACTATAACAACTACTACTACAACAACAGAAAGGAGGAATCTAAATCAGGCTCCGATGAATTGGCATCGCCTCGGGGGATGTTCGAAGCTATGTCGACTGCTGACTCCGACTACAGCTCTCGCGGGAGCAGTAGCAACTACAGCAGCCTACATTCCCCGGGGAATCGCCCTCCCTCGCCGCCGGGTCCGGGTCTGCCAAAGGCGAACGCGACGAAGGGGGACGTGAACGGGCAGCAGCAGTGGAAGGTAATGATTGACGTGCTGAGGTTCAAGAACGTTAGAAGGTTCTCGAACATTCCCTTGCTAGCCGCTAGCTACGAGATCTCTAGGAAGAACCTAAGGAAGAAGGTGGCTCGCAAGAGAGACGGCGAAGACGATGACGATCTTCCCATTGATCTCGATAGCATCCCAACCAAGCCTTCTTGGCGAAATTTCCCTTACGCTGATCTCGCTGCTGCCACCGATAATTTCTCCCCTGAGAACATGCTTGGAAAAGGTGGTCATGCTGAAGTGTATAGAGGATGTTTACCGGACGGTCAAATTGTAGCAGTGAAGAGGCTGATGATGAATGATGAGAAGGAAATTGAGGACCAAGTTGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACATAAACCACCCAAATGCAGCACTCCTTCTGGGATTTGGCATTGAGAAGGGCCTCTACTTTGTCCTCCAATACGCTCCTCGTGGCAGCCTCTCTTCTTTACTCTTTGGTTCTCAAGGCTTGGAGTGGAAGGCAAGGTTCAAGGTAGCTTTTGGGGTCGCTAAAGGATTGAAGTACCTCCATCATGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCGACAATAACTTTGAAGCTGAGATTTCGGATTTCGGATTGGCAAAGTGGCTTCCAGACCAGTGGGAACATCATGTTGTGTTCCCCATTGAAGGCACATTCGGGTATTTGGCTCCAGAGTACTTTATGCATGGACTTGTGGATGAGAAGACTGATGTATTTGCATTCGGGGTTTTGTTATTGGAACTCATAACTGGGCGTCGCGCAGTCGATTCAAACAGCAGGGAGAGTCTTGTGATCTGGGCAAAACCACTGTTGGATGCAAAGCAGATTAAGGAAATAGTAGACCCAAGATTAGGAGATCAGTATGATCTTATTGAAATGAAGAATGCTATGACAACGGCTTCCCTATGTGTCCACCACAAGCCCTCCATGCGGCCATACATGAACAAGGTTGTGAAGCTGCTCAAGGGCGAAGAGGTAGCAGTTGAGATCACTCAAAAAACAAAATCCCCAAGATCATTATTGTTAGATGCATGTGATCTTGAAGACTATACTTGCTCTAATTACTTAAATGATCTTAATCGCCACAAGCAATTAATAATGGAGTGA 1494 0.4665 MQEFRGKLQKVIKKANPDIDWGVFNNYNNYYYNNRKEESKSGSDELASPRGMFEAMSTADSDYSSRGSSSNYSSLHSPGNRPPSPPGPGLPKANATKGDVNGQQQWKVMIDVLRFKNVRRFSNIPLLAASYEISRKNLRKKVARKRDGEDDDDLPIDLDSIPTKPSWRNFPYADLAAATDNFSPENMLGKGGHAEVYRGCLPDGQIVAVKRLMMNDEKEIEDQVGDFLSELGIIAHINHPNAALLLGFGIEKGLYFVLQYAPRGSLSSLLFGSQGLEWKARFKVAFGVAKGLKYLHHDCPRRIIHRDIKASNILLDNNFEAEISDFGLAKWLPDQWEHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKQIKEIVDPRLGDQYDLIEMKNAMTTASLCVHHKPSMRPYMNKVVKLLKGEEVAVEITQKTKSPRSLLLDACDLEDYTCSNYLNDLNRHKQLIME 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04060 497 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 32 497 - -
Aip03g04060 497 Gene3D Transferase(Phosphotransferase) domain 1 262 469 - -
Aip03g04060 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Aip03g04060 497 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Aip03g04060 497 ProSiteProfiles Protein kinase domain profile. 182 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04060 497 Gene3D Phosphorylase Kinase; domain 1 157 260 - -
Aip03g04060 497 Pfam Protein kinase domain 185 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04060 497 MobiDBLite consensus disorder prediction 58 78 - -
Aip03g04060 497 PANTHER OS08G0249100 PROTEIN 32 497 - -
Aip03g04060 497 MobiDBLite consensus disorder prediction 34 101 - -
Aip03g04060 497 SMART serkin_6 182 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04060 497 SUPERFAMILY Protein kinase-like (PK-like) 162 450 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04060 Aip-Chr3 124141225 124144028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04060 144 473 Trihelix Transcription Factor Family AT5G38560 41.349 4.48e-72 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aip03g04060 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04060 - - adu:107480901 921.383