Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04041 ATGACTATGCAACTCTGCTTCTTCTTCTTCTTCTTGTTGTTGCTTGGTGCCTCCTCTTCTGATAAGACAACATTAAGAAAAGGTTTAAGGGGGAGAAACAGCATGCAGACACCATCATCTTCCGATTTTGCAGTCAAGCTTAATGAAAAAAGCCATCAGCAGTTGGTGGTTGATAATGGCATTGTTTCGGTAACTTTGTCAATACCGGAAGGCTATATCATTGGTATATCTTATAACGGAATTGAGAATGTACTTGAACCTCAAAATGAAGACCAAGATAGAGGGTACTTCGATGTTGTTTGGAATGAACCAGGAAAACCCAGTACCTTTCAAAGAATCCACGGAACAAATTTTTCGGTTATAGCTTCTGACGAGAATACGGTGGAGCTTTCATTTTTAAGGACATGGACAACTTCGATGGAGGGCTCAAATGTCCCCATTAATATAGACATAAGGTACATTTTGCGAAGAGGTGATTCAGGATTTTATTCATATGCAATATTTGATCGGCCTGATGAAGGATTTCCAGGTGTTGAGGTTGATCAAATTAGATTTGTTTATAAGCTCCTGAAAGATAGGTTCAGCTATATGGCTCTATCTAGTACAAGACAAAGAACCATGCCAACAATGAGAGACAGAGAAATGGGACAAACTCTGGCTTACCCTGAAGCTGTTCTCTTAACGAAACCAAGCAACCCTCAATTTAGAGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACAGTGAAAACAACGTTCATGGATGGATTAGCCTTCAACCTGATGAATCCGTGGGTTTCTGGATGATTACTCCTTCCAATGAGTTCCGCAATGGTGGCCCCATCAAACAAGACCTCACTTCTCACGTTGGCCCCTTCACTCTTTTCATGTTTGTCAGCACTCACTATGCCGGCAAAGAAGTAACCATGTCTTTCCAACAAGGCGACACTTATAAAAAGGTTTTTGGACCTGTTTTTCTCTATCTTAACTCTGCTTCAATCTCCGATGATCCCTTGTCTCTCTGGTCAGATGCTATTAACCAGCTCTCCAAAGAAGTCAAAGCCTGGCCTTACGATTTTCCACTATCACCAGATTACTTTCCACCCGATCAACGAGGAACAGTGTTAGGAAGATTGTTAGTCCAAGATTGGTGTGTTAAGGGTGGGAGATTGCAGTATGCTAACAATGCTTATGTTGGCCTAGCATTACCTGGAGATGCAGGATCATGGCAGAAAGAGAGCAAGGGTTACCAATTTTGGACTCAAGCTGACTCCAAAGGATACTTTGCAATTAAAAATGTTGTACCTGGGGATTATAACTTGTATGCTTGGGTACCTGGCTTTCTTGGTGATTACAAATATAATTCTACAATCATAATAACACCAGGAGGAGTCATCAAATTGGATCAACTTGTATATAGTCCTCCTAGAAATGGACCAACCATATGGGAAATTGGTATCCCAGATAGAACAGCCGTAGAGTTCTACGTACCAGATCCTTACCCTACTCTCATGAACAAATTATACACTGAACAACGCAAAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATTCTGACATGTATCCAAATGAAGATCTTGTTTTCACTGTTGGTGTCAACAAGTACAATAGAGATTGGTTTTATGCCCATGTTACAAGGAATATGGGGAATAAGACATACGAACCAACAACGTGGCAAATTATATTTGAACATCGCAATGACATAATAGAAGGGAACTACACACTACAATTAGCCCTAGCATCTGCTGCTGATGCTGAACTTCAGGTTCGGTTCAATGATCCAAGTGTTTATCCTGCCCACTTTGGAACAGGGCCAATAGGAGGAGACAATGCCATAGCAAGACATGGAATCCATGGATTGCATAGGCTGTATAGTATTGATGTGCCTAGTCATCATTTTGTGAAAGGAAAGAATATCATTTATCTAAGACAATCTAGAGCTATAAACCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAAAGACCACCAAATCCAACCAATTGA 2040 0.4049 MTMQLCFFFFFLLLLGASSSDKTTLRKGLRGRNSMQTPSSSDFAVKLNEKSHQQLVVDNGIVSVTLSIPEGYIIGISYNGIENVLEPQNEDQDRGYFDVVWNEPGKPSTFQRIHGTNFSVIASDENTVELSFLRTWTTSMEGSNVPINIDIRYILRRGDSGFYSYAIFDRPDEGFPGVEVDQIRFVYKLLKDRFSYMALSSTRQRTMPTMRDREMGQTLAYPEAVLLTKPSNPQFRGEVDDKYQYSCENSENNVHGWISLQPDESVGFWMITPSNEFRNGGPIKQDLTSHVGPFTLFMFVSTHYAGKEVTMSFQQGDTYKKVFGPVFLYLNSASISDDPLSLWSDAINQLSKEVKAWPYDFPLSPDYFPPDQRGTVLGRLLVQDWCVKGGRLQYANNAYVGLALPGDAGSWQKESKGYQFWTQADSKGYFAIKNVVPGDYNLYAWVPGFLGDYKYNSTIIITPGGVIKLDQLVYSPPRNGPTIWEIGIPDRTAVEFYVPDPYPTLMNKLYTEQRKDKFRQYGLWERYSDMYPNEDLVFTVGVNKYNRDWFYAHVTRNMGNKTYEPTTWQIIFEHRNDIIEGNYTLQLALASAADAELQVRFNDPSVYPAHFGTGPIGGDNAIARHGIHGLHRLYSIDVPSHHFVKGKNIIYLRQSRAINQFQGVMYDYIRLERPPNPTN 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04041 679 SUPERFAMILY Galactose mutarotase-like 51 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aip03g04041 679 Pfam Polysaccharide lyase family 4, domain III 482 671 IPR029411 -
Aip03g04041 679 CDD RGL4_M 372 469 IPR029413 -
Aip03g04041 679 Pfam Rhamnogalacturonate lyase family 41 239 IPR010325 -
Aip03g04041 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 675 - -
Aip03g04041 679 Gene3D - 44 350 IPR014718 GO:0030246
Aip03g04041 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 675 - -
Aip03g04041 679 SUPERFAMILY Galactose-binding domain-like 479 672 IPR008979 -
Aip03g04041 679 Gene3D - 479 672 - -
Aip03g04041 679 CDD RGL4_C 484 672 - -
Aip03g04041 679 CDD RGL4_N 54 334 - -
Aip03g04041 679 SUPERFAMILY Starch-binding domain-like 367 471 IPR013784 GO:0030246
Aip03g04041 679 Pfam Polysaccharide lyase family 4, domain II 396 468 IPR029413 -
Aip03g04041 679 Gene3D - 369 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04041 Aip-Chr3 123952929 123959049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04041 55 676 Polysaccharide Lyase AT1G09910 56.090 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04041 K18195 - gmx:100776664 1066.99