Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04040 ATGCCAAATCTATACCTAATTAAATTCGAGGGCGATGCATTTGTGTCGGAAAAAGTTTTACAGCTGACAAAGAACAGAATCGACGGCCCTATTACAAAAAGCGTGGGCCGCGCCTCGTTTGATCAACCGGTGAAGCTTTGGGATAAAGGAACAAGACAGCTCACTGATTTCACCACACATTTCTCTTTTATTATGAAAGCTATCAATCCCAACATGTTCGGTGATGGATTATCATTCTACATTGCACCTTTTGAATCAACCATCCCAAACAATTCAGTTGGAGGGTTCCTTGGGCTCTTCAGCGGGGAATCTGCATTCAACACCACTGCCAATCAAATAGTCGCTGTCGAGTTTGACAGCTTTGAGAATCCATGGGATCCAAACCCTAATCATGTTGGGATCAATGTTAATTCTATAATATCTGTTGCAAACGTGAGTTGGAATAGGAACATGAAGAATGGATCCGTTGCTAATGCTTGGGTTTCATACAACTCCACCACCAAGAATCTCTCCGTGTTCCTTACTTATGCAGATAATCCAACATTCAACGGCAGTTTTAGTCTCTCACATGTCATTGATCTCAGGGAATTCTTGCCGGAATTTGTTAGGATTGGATTCTCCGCCGCCACCGGTGATTGGATCGAAATACACAACGTTCTGTCTTGGTCATTCAATTCAACCTTGGACTCGAGCACGGGGAAAAGCAAGAAAAGAAACCGAGCCAAGAAAGACGACGACGATACGGGGTTCGATGCTTCTATAGAAGATGAATTCGAAAGAGGAACGGGTCCGAAGCGGTTCACTCAGAAGGAGCTAAGCCAAGCGACGAACGGGTTCGCGGAAGAAGGAAAGCTGGGAGAAGGAGGATTTGGAGGTGTGTACAAAGGAGCAGTAGGGAATCCAAGAATGGAAGTTGCGGTGAAGAGAGTATCGAAAGGATCAAAACAGGGGAAAAAGGAGTACATATCAGAAGTAAGAGTAATAAGCAGGCTGAGGCACAGGAATTTGGTTCAACTCATAGGCTGGTGCCATGAGAAAGGTGAGTTTCTTCTTGTTTATGAGTACATGCCTAATGGTAGCCTTGACTCTCATTTGTTTGGAAAAGGAGTCATGCTTTCTTGGGCTGTAAGGTACAAGATTGCATTGGGTTTGGCATCTGCACTTGTTTATCTTCATGAAGAATGGGAACAATGTGTGGTGCATAGGGATATTAAGTCAAGTAATGTCATGTTAGATGCCAATTTCAATGCCAAACTCGGCGATTTCGGTCTAGCAAGGTTGGTGGACCATGAACTGGGGACTCAAACCACGGTTTTGGCCGGCACCATGGGATACCTAGCCCCGGAGTGTGTCACCACTGGGAAATCAAGTAAGGAATCTGATGTGTATAGCTTTGGCGCCGTGGCGCTCGAGATAGCGTGCGGGCGAAGGCCGGTTCAAGTTAAAGAAGAGCCCGGCAAAGTGAGGCTGATAGAATGGGTGTGGAACTTGTATGGACAGGGGAAGCTTCTAGAAGCCGCTGATTGGAGGTTAGATTTGGAATTTGATGTGAAGCAAATGGAGTGCTTGATGACCGTTGGATTGTGGTGTTGTCACCCTGATTATACTATGAGGCCTTCTATAAAGCAAGTCATAAATGTGCTTAATTTTGAAGCTCCTTTGCCAACACTTCCATCACAGTTACCTGTGCCTATGTACTTCGCACCTCCCATGGACATGTGCAAATTCACCTACACTTCTTCTGGAACCACAGCCACATCTAAAGACTCCTCAAACTACTCATCCATGTCAGCAGGGTCCAGAAAATCTCTATTATAG 1818 0.4516 MPNLYLIKFEGDAFVSEKVLQLTKNRIDGPITKSVGRASFDQPVKLWDKGTRQLTDFTTHFSFIMKAINPNMFGDGLSFYIAPFESTIPNNSVGGFLGLFSGESAFNTTANQIVAVEFDSFENPWDPNPNHVGINVNSIISVANVSWNRNMKNGSVANAWVSYNSTTKNLSVFLTYADNPTFNGSFSLSHVIDLREFLPEFVRIGFSAATGDWIEIHNVLSWSFNSTLDSSTGKSKKRNRAKKDDDDTGFDASIEDEFERGTGPKRFTQKELSQATNGFAEEGKLGEGGFGGVYKGAVGNPRMEVAVKRVSKGSKQGKKEYISEVRVISRLRHRNLVQLIGWCHEKGEFLLVYEYMPNGSLDSHLFGKGVMLSWAVRYKIALGLASALVYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGTQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGAVALEIACGRRPVQVKEEPGKVRLIEWVWNLYGQGKLLEAADWRLDLEFDVKQMECLMTVGLWCCHPDYTMRPSIKQVINVLNFEAPLPTLPSQLPVPMYFAPPMDMCKFTYTSSGTTATSKDSSNYSSMSAGSRKSLL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04040 605 PANTHER - 5 233 - -
Aip03g04040 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Aip03g04040 605 MobiDBLite consensus disorder prediction 584 605 - -
Aip03g04040 605 MobiDBLite consensus disorder prediction 233 255 - -
Aip03g04040 605 ProSitePatterns Protein kinases ATP-binding region signature. 285 308 IPR017441 GO:0005524
Aip03g04040 605 Pfam Protein kinase domain 280 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04040 605 ProSiteProfiles Protein kinase domain profile. 279 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04040 605 Gene3D - 2 242 - -
Aip03g04040 605 MobiDBLite consensus disorder prediction 228 255 - -
Aip03g04040 605 SMART serkin_6 279 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04040 605 CDD lectin_legume_LecRK_Arcelin_ConA 7 228 IPR001220 GO:0030246
Aip03g04040 605 CDD STKc_IRAK 293 549 - -
Aip03g04040 605 PANTHER - 240 581 - -
Aip03g04040 605 ProSitePatterns Legume lectins alpha-chain signature. 198 207 IPR000985 -
Aip03g04040 605 Pfam Legume lectin domain 7 235 IPR001220 GO:0030246
Aip03g04040 605 SUPERFAMILY Protein kinase-like (PK-like) 263 573 IPR011009 -
Aip03g04040 605 PANTHER RECEPTOR LECTIN KINASE 240 581 - -
Aip03g04040 605 Gene3D Transferase(Phosphotransferase) domain 1 356 569 - -
Aip03g04040 605 ProSitePatterns Legume lectins beta-chain signature. 114 120 IPR019825 -
Aip03g04040 605 Gene3D Phosphorylase Kinase; domain 1 264 355 - -
Aip03g04040 605 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 229 IPR013320 -
Aip03g04040 605 PANTHER RECEPTOR LECTIN KINASE 5 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04040 Aip-Chr3 123941012 123942913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04040 7 566 Receptor kinase-like Gene Family AT5G10530 51.581 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aip03g04040 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04040 - - gmx:100791518 942.569