Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04029 ATGGAGCTATCTCAACTTGGTTTCCTTGAGGAACTTATGCTTGCTCCAAGAAAAGACACATGGACTAGTAGTACTAGTAATGATGTCTTCTCACCTTCTTCCTGGAACTACTTTGACCCTTTTCTTGATACCCCTTCTTCTTCTTCCTTTCCTCCTTCTGCATTCTCACCACCACCACCAGACCAAAGATTCATCATTGACTGCCCCTTCACCACCTCATACCCTTTTCCCGATGATGCCTTCACAATGCCTGACCTTGACTCTTCCTACACCACCAAGTATGAATATGATGATGCACCACCACCCCCACTCCCACACAACCATCAAGATGTTGATGACGATAATGACAACAACAACAATAATAATAACCCTTCAGTGTTGGAGGATGAAGATGCTGGATATCTTGGCTGCAAGGTTGAGGAACAAGCTGTCGTGGATGTTCAGGTTCATGTTCCTGTGGTCTTCAACATGGGCATGTGTGGGATAGGGGAGAAGAAGAACAAGTCCAAGAAGCTTGAAGGCCAGCCATCAAAGAATCTTATGGCTGAAAGAAGGAGAAGGAAGCGCCTCAATGACCGTCTCTCTATGCTAAGATCAATTGTCCCCAAGATCAGCAAGATGGACAGAACTTCCATTCTTGGAGATACCATAGACTACATGAAAGAGCTTTTGGAGAGGATTAACAAGTTGCAAGAGGAAGAAGTGGAGGAGGGCACAAGTCAGCAAAATCTCTTGGGGGTTTCTAAGGAACTCAAGCCAAATGAAGCGATGGTTAGAAATTCACCCAAGTTCGATGTTGAGAGGAGAGACAAGGACACCAGGATCAGCATCTGTTGTGCCACAAAGCCAGGATTATTATTGTCAACAGTGAATACATTGGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGCTTCAATGATTTCTCAATGCAAGCATCTTGCTCAGAGGTAGCTGAGCAGAGAAATTGTGTTGACCCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGCTATGGTGGGAGATGCCTCTAG 1044 0.4454 MELSQLGFLEELMLAPRKDTWTSSTSNDVFSPSSWNYFDPFLDTPSSSSFPPSAFSPPPPDQRFIIDCPFTTSYPFPDDAFTMPDLDSSYTTKYEYDDAPPPPLPHNHQDVDDDNDNNNNNNNPSVLEDEDAGYLGCKVEEQAVVDVQVHVPVVFNMGMCGIGEKKNKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERINKLQEEEVEEGTSQQNLLGVSKELKPNEAMVRNSPKFDVERRDKDTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRNCVDPEEIKQALFRNAGYGGRCL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04029 347 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 347 - -
Aip03g04029 347 SMART finulus 180 229 IPR011598 GO:0046983
Aip03g04029 347 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 347 - -
Aip03g04029 347 Pfam Helix-loop-helix DNA-binding domain 180 223 IPR011598 GO:0046983
Aip03g04029 347 Gene3D - 163 224 IPR036638 GO:0046983
Aip03g04029 347 MobiDBLite consensus disorder prediction 91 129 - -
Aip03g04029 347 CDD ACT_UUR-ACR-like 273 314 - -
Aip03g04029 347 Coils Coil 213 233 - -
Aip03g04029 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Aip03g04029 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04029 Aip-Chr3 123827767 123829960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04029 28 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 47.564 2.81e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g04029 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04029 - - gmx:100806571 407.912