Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04025 ATGGCTCCGCCCCTGCTGGTTACCAGGGAGGAAGGGCTGAGCAACGCTTCAACTGTAGCGTCTGCATCTTCGCCACAATCCTTGGACTGCTTCTCCCAAAATGGAGGGGTTTCCTTGAAAGAACGCAACTACTTGGGTTTGTCTGATTGCTCATCGGTAGACAGTTCAGCTGCGCCAGGCATGTCTGATGAGAAAAAGGACAATCTGAATTTGAAGGCCACCGAGTTGAGGCTCGGCCTTCCTGGATCCCAATCTCCTGAAAGGGGTCCAGACATCTTCTCATTGAGCTCAACAAAGCTTGATGAGAAACCACTGTTCCCATTGCTCCCGCTCCCTACGAAAGATGGAATCTGCTCATCAACTCAAAAGACTGTAGTTTCGGGAAACAAAAGGGGTTTTGCTGATGCAATGGATGGATTCTCTGAGGGAAAGTTTACTGGTACTGCAGCGATAAATGTGATGCTATCACCCAGACCTGCTGGACTGCAGCCAACTGCAAAGAAGGAAATACCAAGCAAGGTATTACAAGGACAGACCGGCGCAGTCAGTGGAACAGGAGGTGCTGTCAGTGGCAGTTCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCGTTGGCTACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAAGCCCGGCGGTGCTCTTCGTGAAGGTGAGCATGGATGGTGCTCCATATCTGAGGAAGGTTGATCTGAGGAATTATACGACATACCAGGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTATCTTAGGTCAGTGTGGTTCACATGGGGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGCTGAAGGATCTCCTGCATGGTTCAGAATATGTACTTACTTATGAAGACAAAGATGGCGACTGGATGCTCGTAGGAGATGTGCCTTGGGAGATGTTCATTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCTGTGGAAAAATCCAGGAGCAGGAGCTAG 1059 0.4873 MAPPLLVTREEGLSNASTVASASSPQSLDCFSQNGGVSLKERNYLGLSDCSSVDSSAAPGMSDEKKDNLNLKATELRLGLPGSQSPERGPDIFSLSSTKLDEKPLFPLLPLPTKDGICSSTQKTVVSGNKRGFADAMDGFSEGKFTGTAAINVMLSPRPAGLQPTAKKEIPSKVLQGQTGAVSGTGGAVSGSSPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPSPAVLFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFILGQCGSHGAPGREMMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAVEKSRSRS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04025 352 SUPERFAMILY CAD & PB1 domains 230 333 - -
Aip03g04025 352 ProSiteProfiles PB1 domain profile. 232 336 IPR000270 GO:0005515
Aip03g04025 352 MobiDBLite consensus disorder prediction 178 199 - -
Aip03g04025 352 Pfam AUX/IAA family 74 343 IPR033389 -
Aip03g04025 352 Gene3D - 229 346 - -
Aip03g04025 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 345 IPR003311 GO:0005634|GO:0006355
Aip03g04025 352 MobiDBLite consensus disorder prediction 1 27 - -
Aip03g04025 352 MobiDBLite consensus disorder prediction 11 27 - -
Aip03g04025 352 MobiDBLite consensus disorder prediction 178 197 - -
Aip03g04025 352 PANTHER AUXIN-INDUCED PROTEIN 20 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04025 Aip-Chr3 123783154 123785965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04025 246 332 B3 DNA Binding Superfamily AT1G19220 32.184 4.39e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aip03g04025 AUX_IAA 6.6e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04025 K14484 - gmx:547502 531.946