Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04009 ATGGCCATTCACGATCAAAATCGAGTTACCACATCACAGGGTAGTCCTCCAGTGGGAAATGAAGTATCTTCGGGTTCTGAACTGAATTCTGTTACAGATATTCAACTCAAAGACCAGTTTTCAACCACAAATGATGGTGCTCTCAAGGTGAGGAAACCGTACACCATCAAGAAACAAAGAGAGAGGTGGACGGATGAAGAGCACAAGAAGTTCCTTGAGGCTTTAAAGTTACATGGCAGGGCCTGGCGTCGTATCGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTCCGTGACTCTAATGGTAAGATTATCAACTCTGCAGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCGATGCATCCTTACCCCCGTAAGCTAGTAGGGACTCCTAATAAAATAACTTCGGTCAAAGAGCAGCCGAAGAGGTCTAATTCTCTGAAGTCACAAGCAGATTTTGATCAAGAGAACCAATCTCCCAAGTCAGTGTTAACTGGGGTTGGTTCAGACAGTCATGGTTCCTCAGATTCAGATACACCTAACGGAAGCTTATCCCCAATGTCATCCGTTAGCGGGGTCAATTCAAGCGGCTTTACACTTGTGGAACCCAAAACCCCATCCGAGGAAGCTGGACTAAATGCCGATTCAGCTCACAATGAGAACCCTCTTGTGATATCCCAGAAAGAAATCAAAGCAAGCATGGTAGAAGAATCATTTGGTCAGACTGTAAAGCTTTTCGGGATGACTCTATCGGTAACAAACACATGCAGACCCTCACCTCCATCAATTGAGGCATGCAAACCAATACCCGTACACATAAATGTGCATTGCTTTGGCAAGGGGGAAGGAAAATCGGAAATTCCTAGCCATATTGTTCCAAGCGAAACTAGAGCAACATCCAAGCTAAGGCCTAGAATGAGAACTGAAACCTGTGGGAGAGGTTTTGTCCCATATAAAAGGTTCATGGCTGAGAGAGAAAAAAACCACTCTTCCACTGATAGGGAAGAGCAAGGCATCCGGCTTTCATTATAG 1077 0.4448 MAIHDQNRVTTSQGSPPVGNEVSSGSELNSVTDIQLKDQFSTTNDGALKVRKPYTIKKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSNGKIINSAESIEIPPPRPKRKPMHPYPRKLVGTPNKITSVKEQPKRSNSLKSQADFDQENQSPKSVLTGVGSDSHGSSDSDTPNGSLSPMSSVSGVNSSGFTLVEPKTPSEEAGLNADSAHNENPLVISQKEIKASMVEESFGQTVKLFGMTLSVTNTCRPSPPSIEACKPIPVHINVHCFGKGEGKSEIPSHIVPSETRATSKLRPRMRTETCGRGFVPYKRFMAEREKNHSSTDREEQGIRLSL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04009 358 MobiDBLite consensus disorder prediction 119 235 - -
Aip03g04009 358 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Aip03g04009 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Aip03g04009 358 Gene3D - 62 108 - -
Aip03g04009 358 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Aip03g04009 358 SMART sant 59 107 IPR001005 -
Aip03g04009 358 MobiDBLite consensus disorder prediction 338 358 - -
Aip03g04009 358 PANTHER PROTEIN REVEILLE 7-RELATED 15 281 - -
Aip03g04009 358 MobiDBLite consensus disorder prediction 148 217 - -
Aip03g04009 358 MobiDBLite consensus disorder prediction 1 36 - -
Aip03g04009 358 PANTHER SWI/SNF COMPLEX-RELATED 15 281 - -
Aip03g04009 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Aip03g04009 358 CDD SANT 62 105 IPR001005 -
Aip03g04009 358 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Aip03g04009 358 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04009 Aip-Chr3 123472030 123475510 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip03g04009 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04009 - - gmx:780539 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04009 03 123472030 123475510 Aip03g04009 03 123472030 123475510 ECH