Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04006 ATGCGAGTAGTAGTCAAGTGTGAACGCCCAAGCAACCCCAACATTCCACCCTCCTCTTCCCTCACCTATTCTCTCGCTCTCTCTCATTTTTCTAGCTCCCAACGTTCCACATTAAGGGAGGGGAGAGCATTATTATTGCATCATTGGAGATCATCGCTTGGATTATTGAGGTTCCACCCTACAGACGAAGAACTGGTTGCTTATTACCTTAAAAGGAAGATTAATGGCCGTAAAATTGATCTGGAGATCATTCCTGAAGTTGATCTATACAAGTGCGAACCGTGGGACTTGCCAGGGAGGTCGTTGTTGCCGGGTAAGGATTTGGAGTGGTACTTCTTTAGCCCTCGGGACAGGAAGTATCCAAATGGGTCAAGAACTAACAGAGCAACGAAATGTGGGTACTGGAAGGCCACTGGAAAGGACAGGAAGGTAAATTCGCAGAGCCGCGCCGTAGGGATGAAGAAAACCCTTGTGTACTACCGAGGCAGGGCGCCTCACGGGTCTCGCACTGGTTGGGTCATGCACGAGTACCGTCTTCATGAGAGGGAATGCGAAACCAATGCTGCTTCTGGCTTGCAGGATGCCTATGCTCTTTGCCGTGTCTTCAAGAAGGCGGCGGTCATTATCCCCAAAGTGGCAGATCACTATGCTGCTGATAATATCATGATGATGACAACTGATTCTCAAGGAACACCCCAAGTCTTTGACACCATGCCTTGGGATCATCATATTGGGCATAATGGTAAATGCCCACACTTATCTCAAGATCCATTCCTCAATAACCTTCCATCTTCGTCATCCTCCTCATTTCCTCATTATGGAGCCCTAACTTACTCTCCATCTAAGGTGGATGTAGCACTAGAGTGTGCAAGGATGCAGCACAGTTTTTCCATGCCTCCATTGGAGGTAGTGGAGGAATTCCCTAATGTGGGAATTTCAGAGCTCAACATCATGACACGTGGCACCACTTCAATGTGTGGAGGAAGCATGAACAATAACAATGAATCGGATATCTTGCAACAGATTCTTTCACTTGCTAATGCTAATGTTTCTTCCCATGAATTCACAAATCATTCAAACCATTCACACACATTATTGGGTGGCAACAATGCAAATTATGCTGCTCCTCATCATCACGAACATGATTTTGCTTTTAATGCTGGCACAAGTTACACTAATCACGCCGTAAATGATATGAACCCCATGAGATATGAAATCCAAGATCAAAACCTAAGAACAATAGAGATTGGAGATCTTGAAAGCGATGAGTACCTTATACCCATAATTTTGCAGAGCTTTATGGAAGAGCAAAAGACGGTTCCGATTGAGGATATATCAAGCTTCCAAACAAACATACAAGAAAATGAGGTTCAAGCAGAATCTGAGCTACACAATAGCAACAAAGAATTCAGTGAAGCTGACATTGACAATTTCTCAATGGGGTTCATCAACGATGGTGACCCAAATGAGAACTTCATCGATGATGATGACAACATTGATTATTCAAATTCCACAAGCTTTGAGGTCCTTGAAGAAACCAAGGTTAGCCATGGAATGTTTGTGGCGACTCGCCGAGTAGCCGACACATTCTTTCATCAGATTGTTCCTTCACAAACCATCAAAGTTCAACTGAATCCAGTAACAATAATGGGCAACAATTCTTCCATGGAGATGCTCAAGAATAATCAAGAGTCTTTGTTCAAGAAGCTGATGATGATGAAGTCACCAAATACATTAGCAAGTGCTATTGTATTTATCTTTGCACTATTGTTGACGCTTTGTGTTAATTTGAAGGGGCAAGTTGAAAATTATTGGGCATCAAGAAGTGATGATGACACAATTAATGTGAAGAAGAAATGTTGTTATGATGCTAATAGCAGCATGAAGAGAATGAAACAAGTAGCTCACAAGATCATATGGAATCAGCAAGAAAAATCTTGGTGTGTTGGAATTAAAAGTGGGAGAGGATTTAGTGTGGTGTTGAAGAAAATTGGTATTTTCCTCTCCATATCTTTGGCTCTTTGTACCATGTGGGTTAACCATGTTACAATTAGTCCTTAA 2061 0.4246 MRVVVKCERPSNPNIPPSSSLTYSLALSHFSSSQRSTLREGRALLLHHWRSSLGLLRFHPTDEELVAYYLKRKINGRKIDLEIIPEVDLYKCEPWDLPGRSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKCGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLHERECETNAASGLQDAYALCRVFKKAAVIIPKVADHYAADNIMMMTTDSQGTPQVFDTMPWDHHIGHNGKCPHLSQDPFLNNLPSSSSSSFPHYGALTYSPSKVDVALECARMQHSFSMPPLEVVEEFPNVGISELNIMTRGTTSMCGGSMNNNNESDILQQILSLANANVSSHEFTNHSNHSHTLLGGNNANYAAPHHHEHDFAFNAGTSYTNHAVNDMNPMRYEIQDQNLRTIEIGDLESDEYLIPIILQSFMEEQKTVPIEDISSFQTNIQENEVQAESELHNSNKEFSEADIDNFSMGFINDGDPNENFIDDDDNIDYSNSTSFEVLEETKVSHGMFVATRRVADTFFHQIVPSQTIKVQLNPVTIMGNNSSMEMLKNNQESLFKKLMMMKSPNTLASAIVFIFALLLTLCVNLKGQVENYWASRSDDDTINVKKKCCYDANSSMKRMKQVAHKIIWNQQEKSWCVGIKSGRGFSVVLKKIGIFLSISLALCTMWVNHVTISP 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04006 686 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 253 400 - -
Aip03g04006 686 Pfam No apical meristem (NAM) protein 56 179 IPR003441 GO:0003677|GO:0006355
Aip03g04006 686 Gene3D NAC domain 61 207 IPR036093 GO:0003677|GO:0006355
Aip03g04006 686 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 56 219 - -
Aip03g04006 686 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 253 400 - -
Aip03g04006 686 SUPERFAMILY NAC domain 56 204 IPR036093 GO:0003677|GO:0006355
Aip03g04006 686 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 56 219 - -
Aip03g04006 686 ProSiteProfiles NAC domain profile. 52 204 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04006 Aip-Chr3 123394086 123397689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04006 56 677 NAC Transcription Factor Family AT1G65910 39.732 4.50e-128 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip03g04006 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04006 - - ahf:112791681 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04006 03 123394086 123397689 Aip03g04006 03 123394086 123397689 ECH