LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g03999	ATGCCAATGCTGCCAGCACCACCGCTTCCCACCTTCACCATCTTCCTATCCACCCTCATTACTATTTTGGCCACTCCCACCCATTTCGACTTCGACAATCTCACCCTCACCACTCTCAACCTCCTCGGCGATGCCCACATCACCAACGACACCATCACCCTCACCGCTCATCCTTCCGTCCCCAACTCCGCCGCCTCTAGAGCTCTCTACTCCAACCCTCTCCCTTTCCGCCACCCCACCACATCCGCCCCCGCCTCCTTCTCCACATTCTTCTCCTTCTCCATCACCAACCTCAACCCTTCCTCTATTGGTGCCGGCCTTGCCTTTCTCATCTCCCCCGACGACCACTCCCTCGGCGATTCCGGCCCCTCCTTAGGCCTTTCCGGTCCCGACGCCGCCCCCAACTTCGTCGCCGTTGAGTTCGACACCCTCATGGATATCCAGCTCAACGACATTAACGGCAACCATGTCGGCATCGACCTCAATGGCGTTGTTTCAACTCAGGCTGCCGATTTGGGAACCCTCGATATCGACCTCAAGAGCGGCGACACCGTCAACGCATGGATCCTATACGAGGCAACCACCAATGACTTCACCGTTTCGGTCTCCTACTCCAATGTCAAGCCCAAAGATCCCATTTTGAAGCTGAATCTCGATATGGCTCAGTACGTTAACGATTTCATGTACGTTGGGTTTTCTGGGTCTACCCAAGGTAGCACCGAGGTTCACAGTATCCAGTGGTGGAGCTTCACTTCTAGCTTCGATTCTGGGCCGTTGGATTCCGCGCCGCCTCCTCCAACGGCTACTTTAACCAACCCAAGTGCCAGTAGTAGTTCTGCCTCGCTGGCACCACCTTCATTGGCTCCTTCTGGTGCTGAAGAACGGAAGGAAGACGGTAAATCGGGTTGCCACAATGGGTTGTGTAAGAACGGTGTCGGTGTTGGTGCTGTTGCTGGTGTTGTTACTGCGGGTGCTTTTGTTCTTGCTCTATTTGCTGGTGTGTTGATTTGGGTTTACTCTAAAAAGGTGAAGCCTTTCAAGAAGCTCGATTCTCTTGGTTCTGAGGTTATCAGAATGCCTAAGGAGTTTACCTATAAGGAGCTTAAATTGGCAACGAATTGTTTCAGTGTTAATAGGGTCATTGGCCATGGTGCATTTGGTACTGTCTATAAGGCAATTTTGCCTGCGAGTGGTGACATTGTTGCTGTCAAGAGGTGCAACCATGGTGGTGATCAGGGCAAGGATGAGTTCTTCTCTGAGTTGTCCATAATTGGGACACTGAGGCACCGGAACCTGGTTCGCCTTCTGGGATGGTGCCATGAGAAAGGGGAGATTTTGTTAGTTTATGACTTGATGCCCAATGGGAGTTTAGATAAGGCCTTGTATGAGGCAAAAACACCTTTGCCTTGGGATCATCGGCAAAAAATCTTGTTGGGTGTGGCATCTGTTTTGGCCTATTTGCATCATGAATGTGAGAATCAAGTGATTCACAGGGATATTAAGACTAGCAACATAATGTTGGATGAAGGGTTCAATGCCCGGTTGGGTGACTTCGGATTGGCGAGGCAGACGGAGCATGACAAGTCCCCGGATGCCACCGTGGCCGCTGGAACAATGGGATACCTCGCCCCGGAGTATGTCCTCACGGGAAGAGCCACTGAGAAAACAGATGTATTTAGTTACGGTGCTGTGGTTCTTGAGGTTGCTAGTGGGAGAAGGCCTATAGAGAAAGATGCTAATGGTGTTGGTAGAGTTGGGGTTAGCAGCAATCTGGTGGAATGGGTCTGGAGCTTGCACCAAGAAGGAAAGTTGCTGACGGCAGCGGATCCAAGGCTCGAGGGTGAGTATGAAGAAGAGGAGATGAGGAGGGTGATGTTGGTTGGGCTAGCTTGTTCACACCCTGATGCGATGGCTAGGCCAAGTATGAGGAGTGTAGTTCAGATGCTAATGGGTGAGGCTGAAGTGCCCATTGTCCCAAGAATGAAGCCATGTACTAGTTATAGCACTTCCCACCTTTTGAAGACCTTGCAAGATAGTAGTAACTCTGACTATAATGCCATGATCACCACCATATCTATCTCCTCATCAGAGGAAAGCTTCAATGACATAGTTTGA	2115	0.5087	MPMLPAPPLPTFTIFLSTLITILATPTHFDFDNLTLTTLNLLGDAHITNDTITLTAHPSVPNSAASRALYSNPLPFRHPTTSAPASFSTFFSFSITNLNPSSIGAGLAFLISPDDHSLGDSGPSLGLSGPDAAPNFVAVEFDTLMDIQLNDINGNHVGIDLNGVVSTQAADLGTLDIDLKSGDTVNAWILYEATTNDFTVSVSYSNVKPKDPILKLNLDMAQYVNDFMYVGFSGSTQGSTEVHSIQWWSFTSSFDSGPLDSAPPPPTATLTNPSASSSSASLAPPSLAPSGAEERKEDGKSGCHNGLCKNGVGVGAVAGVVTAGAFVLALFAGVLIWVYSKKVKPFKKLDSLGSEVIRMPKEFTYKELKLATNCFSVNRVIGHGAFGTVYKAILPASGDIVAVKRCNHGGDQGKDEFFSELSIIGTLRHRNLVRLLGWCHEKGEILLVYDLMPNGSLDKALYEAKTPLPWDHRQKILLGVASVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDANGVGRVGVSSNLVEWVWSLHQEGKLLTAADPRLEGEYEEEEMRRVMLVGLACSHPDAMARPSMRSVVQMLMGEAEVPIVPRMKPCTSYSTSHLLKTLQDSSNSDYNAMITTISISSSEESFNDIV	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g03999	704	SUPERFAMILY	Protein kinase-like (PK-like)	357	685	IPR011009	-
	Aip03g03999	704	MobiDBLite	consensus disorder prediction	258	301	-	-
	Aip03g03999	704	ProSiteProfiles	Protein kinase domain profile.	375	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03999	704	CDD	lectin_legume_LecRK_Arcelin_ConA	43	254	IPR001220	GO:0030246
	Aip03g03999	704	SUPERFAMILY	Concanavalin A-like lectins/glucanases	25	264	IPR013320	-
	Aip03g03999	704	SMART	serkin_6	375	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03999	704	ProSitePatterns	Legume lectins beta-chain signature.	137	143	IPR019825	-
	Aip03g03999	704	PANTHER	-	25	700	-	-
	Aip03g03999	704	MobiDBLite	consensus disorder prediction	271	285	-	-
	Aip03g03999	704	Pfam	Legume lectin domain	28	256	IPR001220	GO:0030246
	Aip03g03999	704	Pfam	Protein kinase domain	376	647	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03999	704	PANTHER	L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2	25	700	-	-
	Aip03g03999	704	Gene3D	-	25	260	-	-
	Aip03g03999	704	ProSitePatterns	Protein kinases ATP-binding region signature.	381	404	IPR017441	GO:0005524
	Aip03g03999	704	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	495	507	IPR008271	GO:0004672\|GO:0006468
	Aip03g03999	704	CDD	STKc_IRAK	381	651	-	-
	Aip03g03999	704	Gene3D	Phosphorylase Kinase; domain 1	360	451	-	-
	Aip03g03999	704	Gene3D	Transferase(Phosphotransferase) domain 1	452	656	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g03999	Aip-Chr3	123338501	123340689	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g03999	13	679	Receptor kinase-like Gene Family	AT3G53380	65.452	0.0	867

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Aip03g03999		Pkinase	1.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g03999	-		-	gmx:100815895	887.1