Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03992 ATGCCCTTGGAAGGGGTTTTTACTTCTGCTTCTGCTTCTGCTTCTACTTCTTGTGTTCCTGATCTTTCCCTTCACATAAGCCCTCCAACCACCACCAGCTATGCCGGAGGACATCACACCGACCTCTCTCTTGGAAGACGAGAACCACCGCCACCGCCACCATCACTGCCAACTAACATGAACCACATAAACGAAGCCTTGAGACCCATCAAAGGGATCCCCGTTTATCACAACCGTTCTTTCCCTTTCTTACCCATGGATAGGGATCACAATAATCCAAATCCCAAGATGTGCTTATATCATCACATGCCTGCATCTTCTTCTCCTTTCCCAGTGGGAGTGGGTTTAGATCCCATTTCCTTCTTGAATTCCGGGGGAGCAGGAGGGCCTTATAATAATAGGGTTGCGGCGGTGGCTGCTGCCACAAGTAGGTTCAATAATGGGATCCCAAGCCATCAGCATCATCCATTGCACCACCACTACGGGTCAAGGTTCTTGTCTAAGCTGCCAAGCAAGAGGAGCATGAGGGCGCCCAGGATGCGGTGGACTAGCACCCTCCATGCTCGATTTGTTCACGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACACCCAAGTCCGTACTTGAGTTGATGGATGTCAAAGATCTCACATTAGCCCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACTACTGACAAGCCTGCAGCTTCTTCGGGGGTTTTTACTTCTGCTTCTGCTTCTGCTTCTACTTCTTGTGTTCCTGATCTTTCCCTTCACATAAGCCCTCCAACCACCACCAGCTATGCCGGAGGACATCACACCGACCTCTCTCTTGGAAGACGAGAACCACCGCCACCGCCACCATCACTGCCAACTAACATGAACCACATAAACGAAGCCTTGAGACCCATCAAAGGGATCCCCGTTTATCACAACCGTTCTTTCCCTTTCTTACCCATGGATAGGGATCACAATAATCCAAATCCCAAGATGTGCTTATATCATCACATGCCTGCATCTTCTTCTCCTTTCCCAGTGGGAGTGGGTTTAGATCCCATTTCCTTCTTGAATTCCGGGGGAGCAGGAGGGCCTTATAATAATAGGGTTGCGGCGGTGGCTGCTGCCACAAGTAGGTTCAATAATGGGATCCCAAGCCATCAGCATCATCCATTGCACCACCACTACGGGTCAAGGTTCTTGTCTAAGCTGCCAAGCAAGAGGAGCATGAGGGCGCCCAGGATGCGGTGGACTAGCACCCTCCATGCTCGATTTGTTCACGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACACCCAAGTCCGTACTTGAGTTGATGGATGTCAAAGATCTCACATTAGCCCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACTACTGACAAGCCTGCAGCTTCTTCGGGGCTTTCGGATGGATCAGGAGAGGATGAAATGTCTCCTCCAATGGGAAGCAGTGGTATGCGTCAATTTCAAGAGCAAAGAGGCCAACAAGATATGGATTATTCTTCCACCCCAACACTATGGAGTAATAATTCTTCAAGCAATAGGGACCCATGGCCACAAGCTAATTCAAACGACATAGATGGTTTCAGACCAATATCAATGTTTCAGTCTCAATCCATAGGCCATCAAATCCAGCAGGCGTGTGATTCAACCCAAATCAAGAGCAGTTTGTCAGGATCTAATAATAATTTAGAGTGCAAGAATCCAAGTTTGGAGTTCACATTAGGCAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1803 0.4842 MPLEGVFTSASASASTSCVPDLSLHISPPTTTSYAGGHHTDLSLGRREPPPPPPSLPTNMNHINEALRPIKGIPVYHNRSFPFLPMDRDHNNPNPKMCLYHHMPASSSPFPVGVGLDPISFLNSGGAGGPYNNRVAAVAAATSRFNNGIPSHQHHPLHHHYGSRFLSKLPSKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGVFTSASASASTSCVPDLSLHISPPTTTSYAGGHHTDLSLGRREPPPPPPSLPTNMNHINEALRPIKGIPVYHNRSFPFLPMDRDHNNPNPKMCLYHHMPASSSPFPVGVGLDPISFLNSGGAGGPYNNRVAAVAAATSRFNNGIPSHQHHPLHHHYGSRFLSKLPSKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDEMSPPMGSSGMRQFQEQRGQQDMDYSSTPTLWSNNSSSNRDPWPQANSNDIDGFRPISMFQSQSIGHQIQQACDSTQIKSSLSGSNNNLECKNPSLEFTLGRPDWNGKGQA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03992 600 Gene3D - 415 472 - -
Aip03g03992 600 Gene3D - 177 234 - -
Aip03g03992 600 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 35 IPR044847 GO:0000976|GO:0006355|GO:0010158
Aip03g03992 600 PANTHER TRANSCRIPTION REPRESSOR KAN1 1 35 - -
Aip03g03992 600 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 301 599 IPR044847 GO:0000976|GO:0006355|GO:0010158
Aip03g03992 600 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 63 243 IPR044847 GO:0000976|GO:0006355|GO:0010158
Aip03g03992 600 SUPERFAMILY Homeodomain-like 175 231 IPR009057 -
Aip03g03992 600 PANTHER TRANSCRIPTION REPRESSOR KAN1 301 599 - -
Aip03g03992 600 PANTHER TRANSCRIPTION REPRESSOR KAN1 63 243 - -
Aip03g03992 600 SUPERFAMILY Homeodomain-like 413 469 IPR009057 -
Aip03g03992 600 MobiDBLite consensus disorder prediction 471 541 - -
Aip03g03992 600 MobiDBLite consensus disorder prediction 497 541 - -
Aip03g03992 600 MobiDBLite consensus disorder prediction 29 61 - -
Aip03g03992 600 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 416 469 IPR006447 GO:0003677
Aip03g03992 600 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 178 231 IPR006447 GO:0003677
Aip03g03992 600 MobiDBLite consensus disorder prediction 267 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03992 Aip-Chr3 123227164 123233309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03992 243 597 G2-like Transcription Factor Family AT5G16560 43.052 4.21e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g03992 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03992 - - adu:107481025 682.945