Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03985 ATGGTTTTGTCTTGGACCAAAAGAAAGGTCTTCCGCCATCTCCGTAAGGTGACAAAGGAGGATCAACCTCCCTCCGCCGATGAGATTGTCATCCCCGTACACTTTTGCTGCCCAGTGAGCTTGGACATTATGAAAGACCCCGTTACCCTCTCAACCGGCATAACCTACGACAGGGACAGCATCGACAAGTGGCTTGAATCCGGTAACAACACCTGCCCCGTCACCAAACAGCTCCTAACTACCTCCGACATGATCCCCAACCACGCCATCAGAAAGATGATTCAGGATTGGTGCGTCGATAACAGCTCCCATGGCGTCCAGAGGATCCCCACTCCTAGGGCTCCCCTTTCCAGATACGACGTTTCCCAGGAATGTAAGGCCTTGTTGTCCGGTTCACAGCGCGGTGATGATGCCACGTGTCGGGAATCTTTGGCCAAGATCAAGGCTTGGGGGAAGGAGAACGAGAGGAACAAGAGGTGCGTCGTTGGCAACGGTTCCGCTGATGTACTCGCACGTGCGTTTCAGAATTTCTCACGTGATTCGTTCGGCAAGCACGTGGTTGTCTTGGCAGAGATTTTGGAGAATCTGACGTGGATGCTTCCTATTGGCGAAGAGGGTAAAGGGTGTTTGGGCTCGGAAAATTCGTTGACCCGGTTGGTTTTGTTCCTAGGTGGTAATGACCTTGGAGCAAGACAAAGTGCTTCTTTGGTGATTAAGGAGCTAAGTGCTGAAGCACTGGAGAAAAATGAACAACTTGTTGAGGCTTTGGTTAAGATGATTAGGGAGCCAATTGGTCCAATTGCTACAAAATCATGTTTGGCCACAATTTTCAATTTGGTTTCATTAGCACAAAGTAGAGAAGTAATTGCAGAGAGATTTGTGGAATTAGGTTTGGTCTCATTGCTGTTGGATATCATTCTTGATGGTGAAAGAGGGATAACTGAGAAGGCATTGGGGGTCTTGGATTCCATTTGTGATTTCCAAAAGGGGAAGGATTTTGCCAAGAGCAATGCTCTAATGGTTCCTCTTGCAATCAAGAAGATCTTGAGGGTGTCAGAATTGGCCTCTAGCTTTGCGGTTTCTATACTTTGGAAGGTTTGGGATAAGCGTGATGAAGGGGCTCTGATTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAATTGTTGGTTGTGTTGCAAGTTGGTTGTGATGATAGCACTAAGGAGAAGGCTACTGAGTTGCTCAAACTGTTGAATGCTTATCGAGGCAAGGCACAGTGTGTTGATTCTTCTTCATTGGAACTCAAGTACCTTAAGAAGTCATTCTAA 1305 0.4736 MVLSWTKRKVFRHLRKVTKEDQPPSADEIVIPVHFCCPVSLDIMKDPVTLSTGITYDRDSIDKWLESGNNTCPVTKQLLTTSDMIPNHAIRKMIQDWCVDNSSHGVQRIPTPRAPLSRYDVSQECKALLSGSQRGDDATCRESLAKIKAWGKENERNKRCVVGNGSADVLARAFQNFSRDSFGKHVVVLAEILENLTWMLPIGEEGKGCLGSENSLTRLVLFLGGNDLGARQSASLVIKELSAEALEKNEQLVEALVKMIREPIGPIATKSCLATIFNLVSLAQSREVIAERFVELGLVSLLLDIILDGERGITEKALGVLDSICDFQKGKDFAKSNALMVPLAIKKILRVSELASSFAVSILWKVWDKRDEGALIEALQVGAFQKLLVVLQVGCDDSTKEKATELLKLLNAYRGKAQCVDSSSLELKYLKKSF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03985 434 Coils Coil 238 258 - -
Aip03g03985 434 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 434 - -
Aip03g03985 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
Aip03g03985 434 SUPERFAMILY RING/U-box 19 106 - -
Aip03g03985 434 CDD RING-Ubox_PUB 35 77 IPR045210 -
Aip03g03985 434 Gene3D - 118 413 IPR011989 -
Aip03g03985 434 SUPERFAMILY ARM repeat 136 410 IPR016024 -
Aip03g03985 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Aip03g03985 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Aip03g03985 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Aip03g03985 434 PANTHER WDSAM1 PROTEIN 28 434 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03985 Aip-Chr3 123140900 123142700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03985 20 434 U-box Gene Family AT5G37490 46.445 3.79e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03985 - - gmx:548086 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03985 03 123140900 123142700 Aip03g03985 03 123140900 123142700 ECH