Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03979 ATGTCCCAAAGTTCTGCGAGAGTTACGGTGCACAAACCTAGATTAACACTGAAGCAAGTAATGATTTTCCCATTAGAATCTCGTAGAATACCTCCACAAGCCACTCTTCTATCGTTGGAAAATGAACTATCCGAGTTGAGGGGTTCTATTCCCTGGTGGCAATTGCTGAGAGGAAGCGTAGAGAGAAGCTCAGCCAACGGTTCATTGCTTTATCTGCCCTTGTTCCTGCCTGTAAAAGTTTCAAAAGAAAGCAGTTATAGTTCAGATGACAGTGATGAGGAAGAAGAAAAACCTTCTAAAACTCCTCAGAAAAGTGCTAAGGATGTCGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTTCTAAAACCCCTTCTACACCTAGTGTTGCAACAGGTGGATCAAAGACACTATTTGTTGGAAACCTATCATTTAGTTTGCAACGATCTGACTTTGAGGAGTTTTTCAAAGATTGTGGAGAAGTAGTTGATGTTCGTTTTTCTGTTGACGATACTGGGAGGTTTAAACGCTTTAGACATGTTGAGTTTGCTATTGCAAAAGCAGCACAAAGTGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCATCATGTTAGGCTTGATTTAGCTCGTGAAAGAGGTTCATATATCCTGGTGGCAGGTGATCAGCGTCAAACTGGACAAACTATATTCATAAGGGGTTTTGATAAATCTCTTGGAGAAGAGATAAGAGCTAGCCTAAATGAGCATTTTGGTTCCTGCAGGGAGATCTTGAGGGTGTCAGTCCCAAAAGATTTCAAGTCTGGAGGTCCTAAATGTTTTGCCTACATCGACTTCAAGGATTTTTCTAGCATGAAGAAAGCTCTAGAACTCAATGAAACTGAACTTGCTGGTGGTTATTACCTCTCTGTTGAAGACAGAGTGTTTATTATTAATTTGACAGTTATGGTGGTTGATGTTGAGGCATATACCTATGATAATGAGGTCATTAAGAAAGCTGAAGCAATGGGGAAGCCCAAAAATCCTGAAGAAGAAGCTACTGTGGAAACTACTAGAGCCATAAAACATCATCAAGAAAGCTGA 1080 0.4037 MSQSSARVTVHKPRLTLKQVMIFPLESRRIPPQATLLSLENELSELRGSIPWWQLLRGSVERSSANGSLLYLPLFLPVKVSKESSYSSDDSDEEEEKPSKTPQKSAKDVEMVDADSAKKVSKTPSTPSVATGGSKTLFVGNLSFSLQRSDFEEFFKDCGEVVDVRFSVDDTGRFKRFRHVEFAIAKAAQSALELNEHELLNHHVRLDLARERGSYILVAGDQRQTGQTIFIRGFDKSLGEEIRASLNEHFGSCREILRVSVPKDFKSGGPKCFAYIDFKDFSSMKKALELNETELAGGYYLSVEDRVFIINLTVMVVDVEAYTYDNEVIKKAEAMGKPKNPEEEATVETTRAIKHHQES 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03979 359 Gene3D - 214 304 IPR012677 -
Aip03g03979 359 PANTHER BNAA08G02930D PROTEIN 83 310 - -
Aip03g03979 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 204 IPR000504 GO:0003723
Aip03g03979 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 297 IPR000504 GO:0003723
Aip03g03979 359 MobiDBLite consensus disorder prediction 93 117 - -
Aip03g03979 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 304 IPR000504 GO:0003723
Aip03g03979 359 SUPERFAMILY RNA-binding domain, RBD 134 303 IPR035979 GO:0003676
Aip03g03979 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 211 IPR000504 GO:0003723
Aip03g03979 359 MobiDBLite consensus disorder prediction 85 129 - -
Aip03g03979 359 SMART rrm1_1 136 207 IPR000504 GO:0003723
Aip03g03979 359 SMART rrm1_1 228 304 IPR000504 GO:0003723
Aip03g03979 359 MobiDBLite consensus disorder prediction 335 359 - -
Aip03g03979 359 Gene3D - 78 213 IPR012677 -
Aip03g03979 359 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 83 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03979 Aip-Chr3 123100534 123104960 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03979 116 328 Eukaryotic Initiation Factors Gene Family AT4G34110 27.193 1.19e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03979 K11294 - ahf:112735478 479.174