Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03974 ATGAAGAGCATCATATCGAAGAACCCTAACCTCTCTTCATTGTGCACTCCGCGAAGAACGTCGCCGGCGCGCGTGATGCTTCTGTCGGCAATCCCTCTTCTGGCACCCGTTGCTGTCTTCTTATTAAGGGGTTCTATTCCCTGGTGGCAATTGCTGAGAGGAAGCGTAGAGAGAAGCTCAGCCAACGGTTCATTGCTTTATCTGCCCTTGTTCCTGCCTGTAAAAGTTTCAAAAGAAAGCAGTTATAGTTCAGATGACAGTGATGAGGAAGAAGAAAAACCTTCTAAAACTCCTCAGAAAAGTGCTAAGGATGTCGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTTCTAAAACCCCTTCTACACCTAGTGTTGCAACAGGTGGATCAAAGACACTATTTGTTGGAAACCTGTCATTTAGTTTGCAACGATCTGACTTTGAGGAGTTTTTCAAAGATTGTGGAGAAGTAGTTGATGTTCGTTTTTCAGTTGACGATACTGGGAGGTTTAAACGCTTTAGACATGTTGAGTTTGCTATTGCAGAGGCAGCACAAAGTGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCATCCTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTTCATATATCCCTGGTGGCAGTTTCAGCAATTCCTTCCAGAAAGGTGATCAGCGTCAAACTGGTCAAACTATATTCATAAGGGGTGTTGATAAATCTCTTGGAGGGAGATCTCGAGGGTGTCAGTCCTAA 756 0.4378 MKSIISKNPNLSSLCTPRRTSPARVMLLSAIPLLAPVAVFLLRGSIPWWQLLRGSVERSSANGSLLYLPLFLPVKVSKESSYSSDDSDEEEEKPSKTPQKSAKDVEMVDADSAKKVSKTPSTPSVATGGSKTLFVGNLSFSLQRSDFEEFFKDCGEVVDVRFSVDDTGRFKRFRHVEFAIAEAAQSALELNEHELLNHPVRLDLARERGSYIPGGSFSNSFQKGDQRQTGQTIFIRGVDKSLGGRSRGCQS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03974 251 SUPERFAMILY RNA-binding domain, RBD 122 228 IPR035979 GO:0003676
Aip03g03974 251 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 79 242 - -
Aip03g03974 251 MobiDBLite consensus disorder prediction 89 113 - -
Aip03g03974 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 207 IPR000504 GO:0003723
Aip03g03974 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 200 IPR000504 GO:0003723
Aip03g03974 251 MobiDBLite consensus disorder prediction 81 125 - -
Aip03g03974 251 SMART rrm1_1 132 203 IPR000504 GO:0003723
Aip03g03974 251 Gene3D - 74 211 IPR012677 -
Aip03g03974 251 PANTHER BNAA08G02930D PROTEIN 79 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03974 Aip-Chr3 123037023 123039859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03974 123 197 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 6.69e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03974 K11294 - ahf:112735478 289.656