Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03960 ATGGGAAGGCAACCATGCTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAAGACAAGAAGCTGATCAACTTCATCCTCACAAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTTGCAGGCTTGTTAAGGTGTGGTAAAAGTTGTAGGCTTCGGTGGACAAATTACCTCAGGCCAGACTTGAAAAGAGGCCTTCTATCAGAATATGAGGAGAAAATGGTCATTGACCTCCATGCTCAATTAGGCAACAGGTGGTCTAAGATTGCTTCACATCTGCCTGGAAGAACTGATAATGAGATCAAGAATCATTGGAACACCCACATCAAGAAAAAGCTCAAGAAATTAGGAATTGATCCTGTCACACACAAGCCACTCTCTAATAATACCACTCACCAAAATCAAATCAAACCAGAACAACCACCACTTCAAGAGCAAGAACAAGATCATCATGAACCTGAAATTAAGGAGGCAGAGAAGCCTGAGGCAGAGGATCAATTCATGACCCCACTGTTTGAATCCATGGACACAATAATGATGAATGGTTTCTGTACAGATGAAGTTCCAATTTTAGAACCTGATGAGATCCTTGCTCCATGTGCTGGTGATGCTTCTACTTCATCAATAGCAACAACCACTTCTTCTTCTTCATCATCTTCTTCTTCTTCTTCTTCTGATTCTTATTCAAATAATCCATCATCCAAGTTCCTTGAAGACCTTCTTCTCTCAGATTCTGAGTGGTCCAATGACAATAACAACAACAACTATAGCAGCATGGCCTTATGGGATGATGATGACTTCATTAGCAGTTTGGATATGCTTCTTAATGATGATTATTATGACAGTGACAGAAAACAGCAGCAGCAACCTTTTGATGCTTCACTGAATCAGTACCCAAGAATGATCATGGATTCATCAGAATCTTGGGCTTATGGCTTGTTTTGA 954 0.413 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKLGIDPVTHKPLSNNTTHQNQIKPEQPPLQEQEQDHHEPEIKEAEKPEAEDQFMTPLFESMDTIMMNGFCTDEVPILEPDEILAPCAGDASTSSIATTTSSSSSSSSSSSSDSYSNNPSSKFLEDLLLSDSEWSNDNNNNNYSSMALWDDDDFISSLDMLLNDDYYDSDRKQQQQPFDASLNQYPRMIMDSSESWAYGLF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03960 317 Gene3D - 11 67 - -
Aip03g03960 317 Gene3D - 70 163 - -
Aip03g03960 317 SMART sant 66 114 IPR001005 -
Aip03g03960 317 SMART sant 13 63 IPR001005 -
Aip03g03960 317 MobiDBLite consensus disorder prediction 146 168 - -
Aip03g03960 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip03g03960 317 CDD SANT 16 61 IPR001005 -
Aip03g03960 317 MobiDBLite consensus disorder prediction 123 168 - -
Aip03g03960 317 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 247 - -
Aip03g03960 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g03960 317 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Aip03g03960 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip03g03960 317 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 247 - -
Aip03g03960 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip03g03960 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip03g03960 317 CDD SANT 74 112 IPR001005 -
Aip03g03960 317 MobiDBLite consensus disorder prediction 208 234 - -
Aip03g03960 317 MobiDBLite consensus disorder prediction 126 145 - -
Aip03g03960 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03960 Aip-Chr3 122768611 122770156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03960 1 317 MYB Transcription Factor Family AT5G16600 52.786 3.70e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g03960 Myb_DNA-binding 9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03960 K09422 - gmx:100803624 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03960 03 122768611 122770156 Aip03g03960 03 122768611 122770156 ECH