Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03957 ATGGCATCTTCCTTAGACATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGGAGAGCTAGAGGACGTGGTAGAGCCCGTTCTGGCCGTGGAGCAAGCGGGACTCTTGGTGGTGGGAGAATGAATGGTACTGTTAATGGTAGAAGAATGATGACTGGTGCTGTTAGTGCTGGAAGAATGACTGGTGCTGGTCGCAGAGGTCCTCTAATGGTTAATGCTCGGCCATCGTCTTATGCTATCGCCAAGTCGATTCGCAGAGCCAGGCCTTTTCCATGGCAGCATGATTTATTTGAAGATAGTCTTCGAGCTGCTGGCATACAAGGAATTGAAGTTGGCACCAAGTTGTATGTGTCGAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTTGCCGAGCTTGGAGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGTCATCAAAGTGGTTCTGCAGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAACAATGTGCTTTTGGATGGAAAACCTATGAAGATCGAGATTGTTGGTGCCAATGCAGAGTTACCTGTAACGGCTCGTGTGAATGTCACTGGAGTTAATGGGCAGAGGAAACGGACTGTTGTGATGGCGCCAAGAGGAGGGCGAGGTGGAGGTCCTGCTGTCCCTAATCGTGGTGCTGGCATTGGTGCTGGTTGGGGACATCGTGGCGGCCCCCCAAGGAGTGGGAATGGACGAGGTCGAGGTCGGGGGCGTGGCAGGGCCGGCGTCCGAGGTCGTGGGAAAAAGGATGCAGTTGAGAAGTCAGCCGAGCAACTTGATAAAGAATTGGAGAACTATCATGCTGATGCCATGCAGTTCTGA 885 0.4927 MASSLDMSLDDRIKNRSNRGRARGRGRARSGRGASGTLGGGRMNGTVNGRRMMTGAVSAGRMTGAGRRGPLMVNARPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAELGELKRYAVHYDKNGHQSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPVTARVNVTGVNGQRKRTVVMAPRGGRGGGPAVPNRGAGIGAGWGHRGGPPRSGNGRGRGRGRGRAGVRGRGKKDAVEKSAEQLDKELENYHADAMQF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03957 294 Coils Coil 270 290 - -
Aip03g03957 294 Gene3D - 111 191 IPR012677 -
Aip03g03957 294 SMART rrm1_1 116 188 IPR000504 GO:0003723
Aip03g03957 294 PANTHER THO COMPLEX SUBUNIT 4C 1 293 - -
Aip03g03957 294 SMART FoP_duplication_2 219 293 IPR025715 -
Aip03g03957 294 Pfam C-terminal duplication domain of Friend of PRMT1 225 289 IPR025715 -
Aip03g03957 294 MobiDBLite consensus disorder prediction 265 288 - -
Aip03g03957 294 MobiDBLite consensus disorder prediction 217 294 - -
Aip03g03957 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Aip03g03957 294 CDD RRM_THOC4 115 189 - -
Aip03g03957 294 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 293 - -
Aip03g03957 294 MobiDBLite consensus disorder prediction 1 49 - -
Aip03g03957 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Aip03g03957 294 SUPERFAMILY RNA-binding domain, RBD 109 189 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03957 Aip-Chr3 122734765 122738795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03957 114 189 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 3.91e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03957 K12881 - gmx:100801491 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03957 03 122734765 122738795 Aip03g03957 03 122734765 122738795 ECH