Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03952 ATGCCTCCTCCATTTGATATGATTTCTAAAATGCATCCTCCTAAAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGTGTGAAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATAGCATATTTTACTGTTGTGTCAAGTCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAACATTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGTCGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTACGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGAATTCAGGCAGATTATGATTGAGCAAGATGTCAATGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTGCAATCCAAGGTATTGTTGAGGATGGAGGGATACTTATCCTCCCATATTCCAAGGCCTCATTGGAAAGAAGTTGTTGCTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTAGGAGAATTTGTGATGATTCCACCATTATTGCGATGTTTGAACTTCCCGATTATGATGCTGATGATGAGTCTACTCCAAAAAGGAGATGATTTACACAAATCTGTTCCTTGTGGAAAAGCGGATGTTGGTATTAAGAAGGAGTCTTCAGATAGTTTTATCAAAAGTGAGAAAGATGCTGGTGAGTATTCTGGGATTTTGTGTAAATCCCCTGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTACTGTTTCCGGAGGGACTGAGTTTGTTGGCTTAATTGATGGTGAACATGGAAAAGAAGAGAAAACACCCAGCAATGATACTATTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGAGGTGTTGTCCCATGTTCTTGAAGCACCTTCGCAATATGGAGAAAAGCTTAGTCATGAAAATCATGTTGTCACCTCCAAGGGTAAGAGGAATTTGAATCCTCAATTTGAAGAGGCTGCTGTTGATGCAGATGAGCATGGGTTCAAGGTTGCCAAGGTTAAAGGAGTTTGA 1509 0.3844 MPPPFDMISKMHPPKEAWRLKVRVLRLWVVPSFGNHECEKIQATVKKPLLNRFRDHIVEGQVYRIAYFTVVSSHGSYRATSHEFKLVFLHRTTVVTFDEDVIPKTCFNMFPFSELLNMTQDYDFLVVGEEKEYAKEGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQIMIEQDVNGTQPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGILILPYSKASLERSCCSRLIPKVSHMIHFMGLSELGEFVMIPPLLRCLNFPIMMLMMSLLQKGDDLHKSVPCGKADVGIKKESSDSFIKSEKDAGEYSGILCKSPVLIDFLAEKQPTVSGGTEFVGLIDGEHGKEEKTPSNDTISDDLSAELDILLSSAEKETQEVLSHVLEAPSQYGEKLSHENHVVTSKGKRNLNPQFEEAAVDADEHGFKVAKVKGV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03952 502 CDD RPA1_DBD_A_like 19 94 - -
Aip03g03952 502 CDD RPA1_DBD_B_like 127 222 - -
Aip03g03952 502 SUPERFAMILY Nucleic acid-binding proteins 3 99 IPR012340 -
Aip03g03952 502 PANTHER REPLICATION FACTOR A 1, RFA1 22 286 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip03g03952 502 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 286 - -
Aip03g03952 502 Pfam Domain of unknown function DUF223 35 121 IPR003871 -
Aip03g03952 502 Gene3D - 101 229 IPR012340 -
Aip03g03952 502 SUPERFAMILY Nucleic acid-binding proteins 107 220 IPR012340 -
Aip03g03952 502 Gene3D - 4 99 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03952 Aip-Chr3 122613418 122616307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03952 11 218 Core DNA Replication Machinery Family AT5G08020 22.650 8.92e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03952 - - adu:110280586 707.212