Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03939 ATGCTCCGAGTCGACTCGCCCGAGTCACGCGAACCCGCTCTCTTCGCCTTGCTCAACCTCGCCGTCAAGGATGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCCATAATCAGTTTCCTCAAGTCAGAAGATCTAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTCTCTGCCTCTTCAACAAACAAACCGATCATCAGCGCTAGCGGAGCCATTCCTCTTCTCGTGGACATCCTGAGAGATGGAACCCCACAAGCCAAAGCTGATGCAGTTATGGCTCTCTCTAACTTATCAACGTACCCCAATAACCTCAGCATCATCCTCCAAACAAATCCAATCCCTTTCATAGTCAACATTCTCAAAACCTGCAAGAAATCATCAAAAACAGCTGAAAAATGCTGTTCCTTGATAGAATCCTTGATGGAGTACGACGAGGGAAGAATCGCCCTGACATTGGAAGAAGGCGGCGTGCTGGCAGTTGTGGAGGTTCTTGAGAGCGGGACACTCCAGAGCAGGGAGCACGCCGTTGGAGCGCTATTGACAATGTGCGAAAGCGACAGGTGTAAATACAGGGAACCAATCCTTAGAGAAGGCGTGATCCCGGGACTTCTGGAGCTAACTGTTCAGGGGACACCAAAGTCTCAGCCGAAGGCACGCACCCTTTTGCAGCTGCTAAGAGAGTCTCCTTACCCGAGATCTGAAATTCAGCCAGACACTCTTGAGAACATAGTGTGCAACATCATTTCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTGCAAGTTAGCATGGAACAGAGTTTAAGGCATTTACAGCAAAGGGCTCTTGTATGCACACCCACAAGTGATCTTCCTATTGCTTCAGAAGTTCCTTCAAAATCATAG 927 0.48 MLRVDSPESREPALFALLNLAVKDEKNKINIVEAGALEPIISFLKSEDLNLQESATASLLTLSASSTNKPIISASGAIPLLVDILRDGTPQAKADAVMALSNLSTYPNNLSIILQTNPIPFIVNILKTCKKSSKTAEKCCSLIESLMEYDEGRIALTLEEGGVLAVVEVLESGTLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTSDLPIASEVPSKS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03939 308 Gene3D - 151 271 IPR011989 -
Aip03g03939 308 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 35 77 IPR000225 GO:0005515
Aip03g03939 308 Gene3D - 1 150 IPR011989 -
Aip03g03939 308 SMART arm_5 150 190 IPR000225 GO:0005515
Aip03g03939 308 SMART arm_5 65 105 IPR000225 GO:0005515
Aip03g03939 308 SMART arm_5 24 64 IPR000225 GO:0005515
Aip03g03939 308 Pfam Armadillo/beta-catenin-like repeat 25 62 IPR000225 GO:0005515
Aip03g03939 308 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 292 - -
Aip03g03939 308 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 76 118 IPR000225 GO:0005515
Aip03g03939 308 SUPERFAMILY ARM repeat 5 218 IPR016024 -
Aip03g03939 308 PANTHER U BOX DOMAIN-CONTAINING 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03939 Aip-Chr3 122363789 122367291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03939 9 236 U-box Gene Family AT2G23140 35.526 5.83e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03939 - - ahf:112733684 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03939 03 122363789 122367291 Aip03g03939 03 122363789 122367291 ECH