Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03928 ATGGTGGTTGGCTATGTGATGGTTGGGGATATGGTGGAGGCAAAGAGGCTGTTTGATGAAATGCCTCAGAGGAATGTGGCATCATGGAATGCGATCATATGGGATTTTGTGAAGGTGGGGGATTTGGGCAATGCTAGGGTAGTGCTTGATGCTATGCCGGAAAAGAGTGTTGCTTCTTTCACGATCATGATTGATGGCTATGCAAAGGCTGGTGACATGGCTACCTCAAGGTTCTTGTTCGATCAAGCTCCGGAAAAGGATATTGGTGATACATACACGTATAAAATTGCTGTTTCTCTCGAAAAAATCTTGCCGGGATTTGAGCATGTGTATGGTGACATTGTGAGTGGGGTCATAAATGTCAATGAATTAGGGTTCTTGGTTAAGCATATGGAAGGTATGGTGAGGAAGATGGATAGCTCTCGTTCTGTGCTGCTTGCGAGGTGTGTTTCTATTATGGGTAACTGTTTTAGTGCCAGGATCAAAGCTGAGAGCCCTCCACGCGATGAAGAGAAGGTTTTGAGTGGTATAAGCAGCAAGGTATCATCTCGTTCCATGCTTATGTCTCCTCTGACAGAGGGCGAGATTCTGCTATCCACCAATTTAAAGAACTTCAGCTTCATTGAACTAAGAACCGCCACAAGGAACTTTCGTCCGGATAGTCTGGTTGGTGAAGGTGGCTTTGGCTCTGTATTTAAGGGGTGGATCGACGAGCACACTCTTGAACCCACAAAACCGGGCACCGGACTCGTCATTGCGGTGAAGAGGCTAAATCAAGAGAGCACACAGGGACATACTGAATGGCTGACAGAAATCAACTACTTGGGTCAGCTGGATCATCCTAATCTTGTGAAACTCATAGGTTACAGCTTAGAAGATGATCACCGGATTTTGGTGTATGAGTTTTTGACTAAAGGCAGTTTAGATAACCATTTGTTTAGGAGAGCTTCTTATGTTCGCCCGCTTTCTTGGAACATACGCATGAATATCGCTCTTGATGCAGCTAAGGGCCTTGCGTTTCTTCACAGCGACCAAGTAGATGTAATATACCGAGACTTGAAGACTTCTAACATCTTGCTTGATTCGAGTTATCATGCAAAACTCTCTGATTTTGGATTGGCAAAGGATGGACCAGTAGGTGACAAGAGCCATGTCTCTACCAGGATAATGGGAACATTTGGCTATGCAGCTCCTGAATACATAGCCACAGGTCATTTAACGAAGAAGAGTGATGTATACAGTTTTGGCGTTGTACTGCTGGAAATCATAGCGGGGAAACGCGCATTAGATAAGAACAGACCAACAGGGGAGCATAATTTGGTTGATTGGGCCAAGCCTTTGCTCGTCAGCAAAAGAAAAATCTCACAAGTCATGGATTCCCGTTTGGACAGTCAATATCCTTTGCGCGAAGCCATGAAAGTTGCAGTTGTAAGATCCTTGGAGCAACTCAAGGATTCTGAAGACACAACAACAACAAGTGGAGTGGACAAATCTCCAGATCAAACAGTTAAAACGAATGGTAATACTGCAAGATCTAGTAGAGTTAGTTCAAAACAACATAGAAGAAGTAACAATGAATCTTTAAATGGAGAAGGTAGTTCTAATAATCAGACACCATCAGCTTCTCCTCTTCACACTTAG 1641 0.4388 MVVGYVMVGDMVEAKRLFDEMPQRNVASWNAIIWDFVKVGDLGNARVVLDAMPEKSVASFTIMIDGYAKAGDMATSRFLFDQAPEKDIGDTYTYKIAVSLEKILPGFEHVYGDIVSGVINVNELGFLVKHMEGMVRKMDSSRSVLLARCVSIMGNCFSARIKAESPPRDEEKVLSGISSKVSSRSMLMSPLTEGEILLSTNLKNFSFIELRTATRNFRPDSLVGEGGFGSVFKGWIDEHTLEPTKPGTGLVIAVKRLNQESTQGHTEWLTEINYLGQLDHPNLVKLIGYSLEDDHRILVYEFLTKGSLDNHLFRRASYVRPLSWNIRMNIALDAAKGLAFLHSDQVDVIYRDLKTSNILLDSSYHAKLSDFGLAKDGPVGDKSHVSTRIMGTFGYAAPEYIATGHLTKKSDVYSFGVVLLEIIAGKRALDKNRPTGEHNLVDWAKPLLVSKRKISQVMDSRLDSQYPLREAMKVAVVRSLEQLKDSEDTTTTSGVDKSPDQTVKTNGNTARSSRVSSKQHRRSNNESLNGEGSSNNQTPSASPLHT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03928 546 PANTHER KINASE 1B 167 504 - -
Aip03g03928 546 PANTHER OS01G0588500 PROTEIN-RELATED 167 504 - -
Aip03g03928 546 Gene3D Tetratricopeptide repeat domain 1 105 IPR011990 GO:0005515
Aip03g03928 546 Pfam Protein tyrosine and serine/threonine kinase 222 431 IPR001245 GO:0004672|GO:0006468
Aip03g03928 546 MobiDBLite consensus disorder prediction 486 514 - -
Aip03g03928 546 Gene3D Phosphorylase Kinase; domain 1 193 302 - -
Aip03g03928 546 SMART serkin_6 217 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g03928 546 MobiDBLite consensus disorder prediction 485 546 - -
Aip03g03928 546 ProSitePatterns Protein kinases ATP-binding region signature. 223 255 IPR017441 GO:0005524
Aip03g03928 546 Pfam PPR repeat 1 26 IPR002885 -
Aip03g03928 546 Pfam PPR repeat 28 56 IPR002885 -
Aip03g03928 546 Pfam PPR repeat 59 86 IPR002885 -
Aip03g03928 546 Gene3D Transferase(Phosphotransferase) domain 1 303 507 - -
Aip03g03928 546 ProSiteProfiles Protein kinase domain profile. 217 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g03928 546 SUPERFAMILY Protein kinase-like (PK-like) 190 441 IPR011009 -
Aip03g03928 546 MobiDBLite consensus disorder prediction 526 546 - -
Aip03g03928 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03928 Aip-Chr3 122233395 122237907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03928 195 477 Glycoside Hydrolase AT3G07070 50.000 9.67e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip03g03928 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03928 - - gmx:106795104 536.954