Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03920 ATGTCAGAGTTTCTGCTGGGATCCGGGTTCGATCGTCTTCTAGAACAGCTGTCTCAGATCGAGATCAACGGTATTGGGCGTTACGAGCACCCTCCGGCTTCAAAAGCCGCCATTGATTCCTTACCGACAATCGAAATCGATGAGAACCACTTGGATTTGGAATCTCACTGTGCAGTTTGTAAAGAGGCTTTCGAGATGGGAACTTCGGTGAGGGAGATGCCATGTAAGCATATATACCACCAAGACTGTATATTGCCGTGGCTCACACTCCACAATTCCTGCCCTGTTTGCCGCCACGAGTTGCCATCCGATAACCCCAGCAACAGCAGCGGTTCGCCGTCATCGTCGGGGCACTCGGTTGCGTTGACCGAGGATGAGAATGTTGGGTTGACCATTTGGAGGCTCCCCGGTGGAGGATTTGCTGTTGGGAGATTCTCTGGTGGGAGGAGAGGTGCTGAGAGGGAGCTTCCTGTCGTGTATACTGAGATGGATGGTGGCTTTAACAATGGTGGTGAGCCCAGGAGGATTTCTTGGTCTTCTAGAGGAACTCGAGGGCGGCAGAGTGGTGCCTTTCAGAGGTTTTTTACGAGTTTGTTTGGTTGCTTCAGTGGTAGGGGGAGCTCATCGCGTTCTCGAACCGTGGATCACTCTCCACACTCGAGAAGGACATGGTCTATGGATGTAAACAGTGGAATGAGGTCATGGTGA 708 0.5198 MSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDENHLDLESHCAVCKEAFEMGTSVREMPCKHIYHQDCILPWLTLHNSCPVCRHELPSDNPSNSSGSPSSSGHSVALTEDENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGTRGRQSGAFQRFFTSLFGCFSGRGSSSRSRTVDHSPHSRRTWSMDVNSGMRSW 235
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03920 235 Pfam Protein of unknown function (DUF1117) 128 221 IPR010543 -
Aip03g03920 235 SMART ring_2 57 97 IPR001841 -
Aip03g03920 235 SUPERFAMILY RING/U-box 37 104 - -
Aip03g03920 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 104 IPR013083 -
Aip03g03920 235 ProSiteProfiles Zinc finger RING-type profile. 57 98 IPR001841 -
Aip03g03920 235 MobiDBLite consensus disorder prediction 102 121 - -
Aip03g03920 235 MobiDBLite consensus disorder prediction 204 235 - -
Aip03g03920 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 197 - -
Aip03g03920 235 CDD RING-H2_RNF126_like 57 98 - -
Aip03g03920 235 Pfam Ring finger domain 56 98 IPR001841 -
Aip03g03920 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 1 197 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip03g03920 Aip-Chr3 122059181 122059888 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03920 3 111 C3H Transcription Factor Family AT5G01980 42.202 3.67e-25 101
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03920 - K11982 gmx:100807324 355.14