Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip03g03920 | ATGTCAGAGTTTCTGCTGGGATCCGGGTTCGATCGTCTTCTAGAACAGCTGTCTCAGATCGAGATCAACGGTATTGGGCGTTACGAGCACCCTCCGGCTTCAAAAGCCGCCATTGATTCCTTACCGACAATCGAAATCGATGAGAACCACTTGGATTTGGAATCTCACTGTGCAGTTTGTAAAGAGGCTTTCGAGATGGGAACTTCGGTGAGGGAGATGCCATGTAAGCATATATACCACCAAGACTGTATATTGCCGTGGCTCACACTCCACAATTCCTGCCCTGTTTGCCGCCACGAGTTGCCATCCGATAACCCCAGCAACAGCAGCGGTTCGCCGTCATCGTCGGGGCACTCGGTTGCGTTGACCGAGGATGAGAATGTTGGGTTGACCATTTGGAGGCTCCCCGGTGGAGGATTTGCTGTTGGGAGATTCTCTGGTGGGAGGAGAGGTGCTGAGAGGGAGCTTCCTGTCGTGTATACTGAGATGGATGGTGGCTTTAACAATGGTGGTGAGCCCAGGAGGATTTCTTGGTCTTCTAGAGGAACTCGAGGGCGGCAGAGTGGTGCCTTTCAGAGGTTTTTTACGAGTTTGTTTGGTTGCTTCAGTGGTAGGGGGAGCTCATCGCGTTCTCGAACCGTGGATCACTCTCCACACTCGAGAAGGACATGGTCTATGGATGTAAACAGTGGAATGAGGTCATGGTGA | 708 | 0.5198 | MSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDENHLDLESHCAVCKEAFEMGTSVREMPCKHIYHQDCILPWLTLHNSCPVCRHELPSDNPSNSSGSPSSSGHSVALTEDENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGTRGRQSGAFQRFFTSLFGCFSGRGSSSRSRTVDHSPHSRRTWSMDVNSGMRSW | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip03g03920 | 235 | Pfam | Protein of unknown function (DUF1117) | 128 | 221 | IPR010543 | - | |
| Aip03g03920 | 235 | SMART | ring_2 | 57 | 97 | IPR001841 | - | |
| Aip03g03920 | 235 | SUPERFAMILY | RING/U-box | 37 | 104 | - | - | |
| Aip03g03920 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 104 | IPR013083 | - | |
| Aip03g03920 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 98 | IPR001841 | - | |
| Aip03g03920 | 235 | MobiDBLite | consensus disorder prediction | 102 | 121 | - | - | |
| Aip03g03920 | 235 | MobiDBLite | consensus disorder prediction | 204 | 235 | - | - | |
| Aip03g03920 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 197 | - | - | |
| Aip03g03920 | 235 | CDD | RING-H2_RNF126_like | 57 | 98 | - | - | |
| Aip03g03920 | 235 | Pfam | Ring finger domain | 56 | 98 | IPR001841 | - | |
| Aip03g03920 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN | 1 | 197 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip03g03920 | Aip-Chr3 | 122059181 | 122059888 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip03g03920 | 3 | 111 | C3H Transcription Factor Family | AT5G01980 | 42.202 | 3.67e-25 | 101 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip03g03920 | - | K11982 | gmx:100807324 | 355.14 |