Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03897 ATGGAGTCGTCGTGGTCGTGGTCGCGGTCGATCACCGAGACTGTGAACGGGTCCCACCAATTCACTATCAAGGGTTACTCCTTGGCGAAAGGGATGGGTCCGGGCAGGCACATTATGAGCGGCACCTTCAACGTGGGTGGTTATGATTGGGCCATATACTTCTACCCTGATGGCAAGAACCCTGACGACAATTCCATCTACGTTTCGGTCTTCATAGCACTGGCCAGCGAGGGAACCGATGTCAGGGCGTTGTTCAAGCTCACGCTGCTCGATCAGACCCAGAACGGGAACCATAAAGTGCACAGTCATTTCGATCGCCCACTAGAGAGGGGCCCTTACACCATCAAGTACAGAGGCAGCATGTGGGGTTACAAACGATTCTTTAAAAGAGCGTTACTGGAAACATCAGAATATCTGAAAGACGATTGCCTTATCATGCAATGCACTGTAGGTGTTGTGAAAACCCGTCTTGAGGGTTTTAAACCGGGGCTCATTGTGCCATATTCAGACATGGGCCGAGACTTTAAGGACTTGTTGGAGTCCGAAATTGGTTTTGACATAGTTTTCAAGGTCAAGAGTGAAAGCTTCAAAGCTCATAAGTTGATACTTGCTGCCCGATCTCCTGTCTTCAGAGAGCAGTTTTCTGGAGGAGTTGGGGATCCTAGCATAGATGAAATAGTGGTTGATGATATTGAGCCTTTTGTCTTCAAGGCAATGCTTCTCTTCATTTACACAGACAAACTTCCTGAGATGTCCGATATTATGGGCTCAATAAATATGTGCTCGTGTACTGTCATGGTGCAGAATCTGTTAGCTGCTGCTGATCTCTATAATCTTGATCGTCTAAAACTACTGTGTGAATCAAAATTGAGTGAAAAAATCAACACTGACACTGTTGCCACAACACTTGCCCTGGCTGAGAAACATCATTGTCCGCAGCTTAAGGCGATCTGTTTAAAATTTATTGCAAATCCAGTAAACATAGGAGTGGTAATGCTGTCGGAAGCTTTTGAACATTTGAAAGAAGGTTACCCTAAGATGCTGTCGGAATTGCTCAAGACATTTGCAGCAGGAGATGATAATTCAAGCCAGCCATCAAGCAGGAAAAGAAAAGCATCTTCAGATAGATTCCTTCCTCCTCAAGGAAGAATTATTTTGCCTTACACAATCTTGTTGGGAACATGA 1185 0.4523 MESSWSWSRSITETVNGSHQFTIKGYSLAKGMGPGRHIMSGTFNVGGYDWAIYFYPDGKNPDDNSIYVSVFIALASEGTDVRALFKLTLLDQTQNGNHKVHSHFDRPLERGPYTIKYRGSMWGYKRFFKRALLETSEYLKDDCLIMQCTVGVVKTRLEGFKPGLIVPYSDMGRDFKDLLESEIGFDIVFKVKSESFKAHKLILAARSPVFREQFSGGVGDPSIDEIVVDDIEPFVFKAMLLFIYTDKLPEMSDIMGSINMCSCTVMVQNLLAAADLYNLDRLKLLCESKLSEKINTDTVATTLALAEKHHCPQLKAICLKFIANPVNIGVVMLSEAFEHLKEGYPKMLSELLKTFAAGDDNSSQPSSRKRKASSDRFLPPQGRIILPYTILLGT 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03897 394 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 5 365 - -
Aip03g03897 394 SMART math_3 21 133 IPR002083 GO:0005515
Aip03g03897 394 Gene3D - 293 373 - -
Aip03g03897 394 SUPERFAMILY TRAF domain-like 13 152 - -
Aip03g03897 394 SUPERFAMILY POZ domain 167 292 IPR011333 -
Aip03g03897 394 Gene3D Potassium Channel Kv1.1; Chain A 164 289 IPR011333 -
Aip03g03897 394 SMART BTB_4 185 294 IPR000210 GO:0005515
Aip03g03897 394 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 15 155 IPR008974 GO:0005515
Aip03g03897 394 ProSiteProfiles BTB domain profile. 185 252 IPR000210 GO:0005515
Aip03g03897 394 Pfam BTB/POZ domain 175 293 IPR000210 GO:0005515
Aip03g03897 394 CDD MATH 17 150 IPR002083 GO:0005515
Aip03g03897 394 CDD BTB_POZ_BPM_plant 171 291 - -
Aip03g03897 394 MobiDBLite consensus disorder prediction 357 376 - -
Aip03g03897 394 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 5 365 IPR045005 GO:0016567
Aip03g03897 394 ProSiteProfiles MATH/TRAF domain profile. 16 150 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03897 Aip-Chr3 121717870 121721978 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aip03g03897 BTB 3.4e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03897 K10523 - gmx:100778300 590.882