Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03894 ATGGAGGCCACCCCAACCAACCTCCTCCTCTTCCTTCTATCATCCCTTCTTTTCATCTCACATGCTCCTCACGTGACACCAGCAACCCCATGCCCCCGGTGCGGCAACGCCACCGTCCCATTCCCACTAAGCACCACCCCGACCTGTGGCGACCCCGCCTACAAGATCCGCTGTACCTCCAACACACTCGTCTTCGACACGCTCAACAACTCCTACCCGATCGAGTCCATAAACCCTCAGTCCCAGCGCCTCGTGATCCGTCCTGCGCCGCTCGTGCCGAACAAGTGCGTCACCACCGATAAGGTTCACCAAGGGATCCAGCTCAACAGCACTCTCCCTTTCAACATCACAAGCTCCAATACCATTGTTTACCTCAACTGCACCCAAACGCTTCTTATGTCGCCGCTTAACTGCTCCTCCTCCAGCCTCTGCCATACCTACATCAACGCCACCGCATCCGCCTCCGTATGTAATAACGGACCGCTCTGTTGCACGTTCCGTGCCGGCGGCTCTAGTAACTCCTACCAGATTCGGGTTAGGGATGTTGGTTGCAGTGCCTATTCGAGTTTTGTGAACTTGAACCCGGTTCTTCCGGTGAACCGCTGGCCCCAACCCGGTTTGGAGATCCAGTGGCTGTCGCCTAGGGAAACGGTTTGCGCGTCGCAGAAGGATTGTGATTCTGCCACGTCGGCGTGTGGACCAGACCCTAGCTCTGGGAGTGGGATTAAGAGGTGCTTCTGCATCAATGATCTTGTGTGGGATCCCATTAATGGGGTCTGCGCAAAAAAGGTTACTTGTGAGGATCCGAATGGCTGTGGAGGAACCGATAGAACAGCACTAATAGCAGGTTTAACATGCGGGATCGGAGCAGGGCTCATCCTGGCCGCAATCTTTGTCCTGCTCTACAAGCGCCACCGGCGTATTGTGGAAGCGCAAGAGCGCCTAGCCAGAGAGCGCGAAGGCATTCTCAACGCCAGCGGTGGTGGAAGGCCCGCAAAGCTCTTTAGCGGCAAGGAAATCAAGAAGGCCACCAATGACTTCTCACCGGACCGCCTCCTCGGAGCAGGCGGCTACGGGGAGGTCTACAAAGGCACCCTCCAAGACGGCACCGTAGTGGCCGTGAAAATCGCCAAGCTCGGCAACGCCAAAGGAACGGACCAAGTCCTGAACGAGGTCCGCATACTCTGCCAAGTCAACCACCGGAGCCTCGTGGGCCTCCTTGGTTGCTGCGTGGAGCTCCAGCAACCAATCATGGTCTACGAGTTCATAGAAAACGGAACACTCCTCGACCACTTGCAGGGTCAATTAAAAAAGGAACACAGCCTTTTGACATGGAAGCACCGCCTTGGAATCGCGCGTGACACCGCTGAAGGCCTCGCTTACCTTCATTTCATGGCTGTTCCTCCTATTTACCACAGAGACGTCAAGTCCAGCAACATTCTCCTGGATTCCAAGCTTAATGCTAAGGTCTCCGATTTCGGTTTATCTAGGTTGGCCCAAACTGATATGAGCCACATTTCAACCTGTGCTCAGGGTACTCTTGGCTACCTTGATCCTGAATACTATAGGAACTACCAATTGACGGATAAGAGTGATGTTTATAGTTTTGGTGTTGTGCTGCTTGAGCTTCTCACAGCGCAGAAGGCCATAGATTTTAACAGGGATGCGGATGATGTGAACTTGGCTGTTTATGTGCAGAGGATGGTAGAGGAAGAGAGGGTGCTGGAGGTGATTGATCCGGTCTTGAAGAATGGGGCTGGTGCCGTGGAGATTGACACGATGAAGGCGTTGGCGTTTCTTGCGCTTGGATGCTTGGAGGAGCGGAGGCAGAACCGTCCTTCCATGAAGGAGGTGGCAGAGGAGATTGAATATATCATTAGTATTGCCACTGCAAAGGATGTGGAGAATTGA 1911 0.5395 MEATPTNLLLFLLSSLLFISHAPHVTPATPCPRCGNATVPFPLSTTPTCGDPAYKIRCTSNTLVFDTLNNSYPIESINPQSQRLVIRPAPLVPNKCVTTDKVHQGIQLNSTLPFNITSSNTIVYLNCTQTLLMSPLNCSSSSLCHTYINATASASVCNNGPLCCTFRAGGSSNSYQIRVRDVGCSAYSSFVNLNPVLPVNRWPQPGLEIQWLSPRETVCASQKDCDSATSACGPDPSSGSGIKRCFCINDLVWDPINGVCAKKVTCEDPNGCGGTDRTALIAGLTCGIGAGLILAAIFVLLYKRHRRIVEAQERLAREREGILNASGGGRPAKLFSGKEIKKATNDFSPDRLLGAGGYGEVYKGTLQDGTVVAVKIAKLGNAKGTDQVLNEVRILCQVNHRSLVGLLGCCVELQQPIMVYEFIENGTLLDHLQGQLKKEHSLLTWKHRLGIARDTAEGLAYLHFMAVPPIYHRDVKSSNILLDSKLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRDADDVNLAVYVQRMVEEERVLEVIDPVLKNGAGAVEIDTMKALAFLALGCLEERRQNRPSMKEVAEEIEYIISIATAKDVEN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03894 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Aip03g03894 636 CDD STKc_IRAK 353 623 - -
Aip03g03894 636 Gene3D Transferase(Phosphotransferase) domain 1 423 635 - -
Aip03g03894 636 SMART serkin_6 347 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g03894 636 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Aip03g03894 636 SUPERFAMILY Protein kinase-like (PK-like) 330 622 IPR011009 -
Aip03g03894 636 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 631 IPR045274 GO:0007166
Aip03g03894 636 Pfam Wall-associated receptor kinase galacturonan-binding 31 86 IPR025287 GO:0030247
Aip03g03894 636 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Aip03g03894 636 Pfam Protein tyrosine and serine/threonine kinase 351 621 IPR001245 GO:0004672|GO:0006468
Aip03g03894 636 ProSiteProfiles Protein kinase domain profile. 347 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g03894 636 PANTHER OS05G0318100 PROTEIN 22 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03894 Aip-Chr3 121693615 121695833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03894 31 635 Receptor kinase-like Gene Family AT5G02070 54.032 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aip03g03894 PK_Tyr_Ser-Thr 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03894 - - gmx:100305415 1052.74