Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03889 ATGGCTTCTCCTTCTTCTGATATCAACCATCTTTCACACCCTTGCATATATGGGGATTTTGTTTCTTCATATTCAGAGAGAAAGTCTGGGTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGATCATCAAGTAGAGGAAGGAGTGATAGTAGTGGTCGTCATCTACAGCAGCCTGCAGAGGAAAACATGGTTTGGCGAGCACCTTCTAGATCATTGGATGACCGTGCTAGATCCCGGAAGGATGAAGAGGATTTGAACCGAGCAATTGCACTTTCTTTAGGTGAAAATTTCAAGAGACCAAATGGTTATAGATGGCACACAGGCAGTGATGATATTGATGATTACTCAAAGGCCCTTCAGGATCGCATGCACTCATCTGCACATCCTCCATATACACCTGCACCTTTATATCCCAGAGGATATAGTTTGGCAAATGTAAGAATATGTGGAGGGTGCAATCAGGAGATACTATATGGAAATTGTTTGGGATGGATGGATACTTATTTTCATCCAGATTGCTTCCGTTGTCACTCTTGTCGCCACCCTATTACTGAACGCGAGTTTTCTTTGTCAGGGAGCCGTCCATATCACAAGACTTGTTTTAAAGAGTTAACACACCCTAAATGTGAAGTTTGCCATCAATATATTCCAATAAATGCAGCTGGTTTGATTGAGTATAGGTGCCATCCCTATTGGTACCAAAAGTATTGTCCATCACATGAGTATGATAATACAGCTCGCTGTTGTAGTTGTGAAAGATTAGAGTCGCGGAACGAAAAGTATTATAGACTGGACGATGGACGGATTTTGTGCTTCGAGTGCATGGAATCTGCTATAACGGATACTGGTGAATGCCAGCCTCTATACCATGCCATCAGAGATTATTATGAAGGGATGAACATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTGGGTAGAGATGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGTTTCCATCATTTGCCTGAAACAAGGGGTTTGTGCCTCTCAGAAGAGCAAACTGTCACCAGTGTACATAGATGGCCAAGAATGGGAGGGCATAGATTCATAGGAATGAGAACTCAACATCAAAAGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTTTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTAGCCCATGAGTTGATGCATGCTTGGTTGAGACTTAAAGGTTACCGGAACCTTGATGCGGAAGTAGAGGAAGGTATTTGTCAGGTTCTATCATACATGTGGCTTGAATCAGAAGTGATGCCAGGGTCTAGTAGATACATGCCATCAACATCATCAGCATCTTCATCTTCTTCCTACTCCACATCATCATCATCATCAAAGAAAGGAGCAAGGTCTCAAGTTGAGAACAAGTTAGGAGAGTTTTTCATGAACCAGATAGCCAATGATTCGTCACCAGCATATGGAGGTGGGTTTAGGTCTGCAATTGAAGCAGTTAATAAGTATGGTTTGCGTTGTACCTTGGATCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1557 0.4181 MASPSSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSSSRGRSDSSGRHLQQPAEENMVWRAPSRSLDDRARSRKDEEDLNRAIALSLGENFKRPNGYRWHTGSDDIDDYSKALQDRMHSSAHPPYTPAPLYPRGYSLANVRICGGCNQEILYGNCLGWMDTYFHPDCFRCHSCRHPITEREFSLSGSRPYHKTCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWYQKYCPSHEYDNTARCCSCERLESRNEKYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGRDALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPRMGGHRFIGMRTQHQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDAEVEEGICQVLSYMWLESEVMPGSSRYMPSTSSASSSSSYSTSSSSSKKGARSQVENKLGEFFMNQIANDSSPAYGGGFRSAIEAVNKYGLRCTLDHIRLTGHFPL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03889 518 Gene3D Cysteine Rich Protein 140 207 - -
Aip03g03889 518 SMART lim_4 149 201 IPR001781 -
Aip03g03889 518 ProSitePatterns LIM zinc-binding domain signature. 150 184 IPR001781 -
Aip03g03889 518 CDD LIM_DA1 150 202 - -
Aip03g03889 518 Pfam Protein DA1 299 513 IPR022087 -
Aip03g03889 518 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 518 - -
Aip03g03889 518 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 144 175 - -
Aip03g03889 518 MobiDBLite consensus disorder prediction 44 58 - -
Aip03g03889 518 Pfam LIM domain 150 203 IPR001781 -
Aip03g03889 518 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 233 - -
Aip03g03889 518 ProSiteProfiles LIM domain profile. 148 208 IPR001781 -
Aip03g03889 518 PANTHER PROTEIN DA1-RELATED 2 21 518 IPR045218 -
Aip03g03889 518 MobiDBLite consensus disorder prediction 44 64 - -
Aip03g03889 518 MobiDBLite consensus disorder prediction 438 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03889 Aip-Chr3 121611250 121614323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g03889 DA1-like 1.2e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03889 - - gmx:100798829 893.649