Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03881 ATGAATTCAATATTTCAACACCCTTCTTCTCCGCCGCATTCAACTGCCGCCATTACCACCCTTCTTATGGCCTATTCAAGCATGTGCAGATCCTGCGAAGGAAAATTGCTCCATGGCTCGGCGTTGAGGTGTGGGGTTGAAGGTGATATGTTTGTTGGAATCTGTTTGGTCGATATGCATGGAAAATGTGGAAAGATTGGTGATGCTCGCAAGGTGTTTGATGGAATGTCTAAGAAGAATGTAGTTTCATGGACGGCTATGGTGGTTGGCTATGTGAAGGTTGGAGATATGGTGGAGGCATGTAAAGCATACGATGATTCAGGGATTGTCTTGGACTTTGGAGATGGTGTCAGTCACACAGTTCTTATCTACGAAGGTTATGCTCTTCCGCATGCAATCTTGCGTTTGGATATTGCAGGGCGTGATCTCACCGATGCCTTGATGAAGATCTTGACTGAGTGTGGATACTCTTTCACGACATCAGCTGAGCACAAAATTGTGAGAGACATGAAGGAAAAGCTAGCTTATATTGCTCTTGATTATGAGCAAGAGCTAGAAACTGCGAAGACTAGCTCAACTGTTGAGAAGAGCTATGAGCTACCAGATGGACAGGTTATCACAATAAGAGCTGAAAGATTCCAATGCCCTGAAGTTCTCTTCCAGCCATCCATGATCGGGATGGAATCTCCTGGAATCCATGAAACCACATATAATTCGATCATGAAGTGTGATGTTGATATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTTGTTCCACTATGTTTCCAGGCATTGCTGACAGGATGAGCAAGGATATTACAGCATTAGCACCGAGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACATTGTTTGGATTGGGGGCTCCATTTTGGCATCTCTTGGCACATTCTAA 933 0.4405 MNSIFQHPSSPPHSTAAITTLLMAYSSMCRSCEGKLLHGSALRCGVEGDMFVGICLVDMHGKCGKIGDARKVFDGMSKKNVVSWTAMVVGYVKVGDMVEACKAYDDSGIVLDFGDGVSHTVLIYEGYALPHAILRLDIAGRDLTDALMKILTECGYSFTTSAEHKIVRDMKEKLAYIALDYEQELETAKTSSTVEKSYELPDGQVITIRAERFQCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGCSTMFPGIADRMSKDITALAPSSMKIKVVAPPERKYIVWIGGSILASLGTF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03881 310 Gene3D - 222 296 - -
Aip03g03881 310 Pfam PPR repeat 56 81 IPR002885 -
Aip03g03881 310 Pfam PPR repeat 82 105 IPR002885 -
Aip03g03881 310 Pfam Actin 100 310 IPR004000 -
Aip03g03881 310 SMART actin_3 26 310 IPR004000 -
Aip03g03881 310 Gene3D Actin; Chain A, domain 4 140 221 - -
Aip03g03881 310 PRINTS Actin signature 98 117 IPR004000 -
Aip03g03881 310 PRINTS Actin signature 194 210 IPR004000 -
Aip03g03881 310 PANTHER ACTIN-7 91 310 - -
Aip03g03881 310 SUPERFAMILY Actin-like ATPase domain 107 310 IPR043129 -
Aip03g03881 310 TIGRFAM PPR: pentatricopeptide repeat domain 55 82 IPR002885 -
Aip03g03881 310 TIGRFAM PPR: pentatricopeptide repeat domain 82 106 IPR002885 -
Aip03g03881 310 Gene3D Tetratricopeptide repeat domain 7 124 IPR011990 GO:0005515
Aip03g03881 310 PANTHER ACTIN 91 310 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03881 Aip-Chr3 121475996 121477092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03881 91 310 Cytoskeleton Gene Families AT5G09810 83.182 1.75e-130 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03881 K10355 - aip:107633709 405.601