Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03867 ATGGTTTACTCCTTTTATAACTCCAATCATTCTTCTTCCCCCGGCTTCGATGTTTCGAGGTTGATTAGTCCTTCTTTGCATGACTATGGAGCTTCCTATGGTGGTTTGGAACCATCACATGCATTGATTTTGGAGAGTGAAAAGATAGAGCAAGTGAATAATGGATCAGAAGATGCAAGGGTTGGAAAGAATTATGAGAACTCTGATGCAAAAGCCTTAGCTGCTTTGAAGAATCACAGTGAAGCTGAGAGGAGGAGGAGGGAGAGAATCAATGGTCATCTTGCAACTCTACGAGGTCTTGTTTCCTCCACTGACAAGATGGACAAAGCAACAATATTATCAAAAGTGGTTAGCCAAGTGAAGGAATTGCAGAGGAATGCAATGGAAGCAAGTAAAGGTCTTCTAATCCCAACAGATTTTGATGAAGTTGAAGTTGAACCATATGAAGATCATAGATCCATGTCATACAAGGCATCCATCTGCTGTGATTACCGGCCGGAGATTCTCTTCGACCTGCGACACACACTTGATGCCCTTGAACTGCAACTGGTGAGGGCAGAGATATCAACCTTAGAAGGAAGAATGAAAAATGTGTTTGTGTATAGATGTTGCAAAGGGAAAGGTGACAATAATAACACCGAGGCATGTCAAGCTCTTGCAAGAAATGTTCAAAAGGCACTGAGTCTTGTAATAGATAAGGCTTCTAATGCACTTGAGTACTCACTCAGAGCTTCACTTCCATGTAAGAGAAGAAGAATCTGCTTGCTTGAGAATTGA 777 0.417 MVYSFYNSNHSSSPGFDVSRLISPSLHDYGASYGGLEPSHALILESEKIEQVNNGSEDARVGKNYENSDAKALAALKNHSEAERRRRERINGHLATLRGLVSSTDKMDKATILSKVVSQVKELQRNAMEASKGLLIPTDFDEVEVEPYEDHRSMSYKASICCDYRPEILFDLRHTLDALELQLVRAEISTLEGRMKNVFVYRCCKGKGDNNNTEACQALARNVQKALSLVIDKASNALEYSLRASLPCKRRRICLLEN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03867 258 PANTHER TRANSCRIPTION FACTOR BHLH30 33 257 IPR045847 GO:0003700|GO:0006355
Aip03g03867 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 126 IPR036638 GO:0046983
Aip03g03867 258 Pfam Helix-loop-helix DNA-binding domain 78 124 IPR011598 GO:0046983
Aip03g03867 258 Gene3D - 71 132 IPR036638 GO:0046983
Aip03g03867 258 PANTHER DNA BINDING PROTEIN-LIKE 33 257 - -
Aip03g03867 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Aip03g03867 258 SMART finulus 80 129 IPR011598 GO:0046983
Aip03g03867 258 CDD ACT_UUR-ACR-like 159 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03867 Aip-Chr3 121270168 121273883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03867 51 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 34.555 3.84e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g03867 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03867 - - gmx:100804756 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03867 03 121270168 121273883 Aip03g03867 03 121270168 121273883 ECH