Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03851 ATGGGTCTTGTGGATAGAGAATCAGTATGGATAATTCCAGAGAGTATAACTAATCTATTGGATTCTGTCAATAAGTCTGCTATTTCCTATATGGAAGGGGCTATAGGGATCAAGAACTACTACTCTGAAAATAGCACAGAGTATAAAGATTTTGAAGCTCAGTTCCGGAGAACATTTCACTCCAAGTATACCGAGGAAGATAACCGCAACCCAGGATTCTACGGTCTGCAAGCATATGACAGCATTAAAATTGTTGCACAAGCAGTGGACAGAATAGCCAGTCACAATAGTAGTAGCAGCAGTAGTGGGAAGACTTTACTAAGAGGAATATTGTCTAGCAAATTCCTTGGTTTAAGTGGAGAAATTCAATTTCAAGAATTGCAGCTCATGCAGAACCCTACCTTAAGGATTGTTAATATTGGTGGGAGGAGTTATAGGGAACTAGATTTTTGGAGTCTAGAACATGGATTTACCAGTAGATTAGGAGAAGGTGGAAATGATACTTCTAGGAACACAGAGGGTTTAAGTGGAGTGGTAATTTGGCCAGGGAAATTGTTGAGAGTTCCAAAAGGGTGGAATCTGCCTACTAAGGAAAATCCAATGAGAATTGCAGTGCCAGGAAGAACTTCATTTTCCAAGTTTGTCAAGGTCGATTATGGTGAGAATGGAAAGCCAAATAAATATAGTGGATTCTGCATTGAAATTTTTGATAAGGTGTTAGAACTATTGGATTATGATTTGCCATATGAGTACTATCCCATCAATGGAACCTATCCTGACCTGGTCCAACTTGTCTATAACAAGACTTATGAGGCTGTTGTTGGGGACATAACCTTACTAGCAGACAGAATGCCATTTGTAGATTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGGTAGTTCCATCAAAGTCAGATGAATCAGCATGGATGTTCCTGAAGCCTTTCACCTGGCAAATGTGGGTGGTAACTGCTGCTATCTTGTTCTACACAATGTTGGTAGTGTGGTACCTGGAGCGAGAATCAAATCCCGAGTTTCATGGCAACTGGAAGAGCCAACTTAGCACTGCACTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCATAAGGAGAACTTGTCTAGCAACTTAAGCCGTGTTGTGATGGTATCTTGGCTGTTTCTAGTTCTGATCCTTAACTCGAGCTACACTGCAAGTCTTTCATCGATGCTCACAGTTCAACAACTGCAACCGAATATCACAGACATCGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGCGATGGAGATTCTTTTGTTAGGACATACCTTGAGAGAGTAGAGAGGTTCAAGGTAGAAAACATCATAAATGTTAGCAGTGAATACAGCTATGTTGATGTATTCAAAAACGGCACCATAGCAGCTGCTTTTCTTGAACTCCCTTATGAAAAAGTATACATGAGTAAATACTGCAAGGGCTTCTCTGGCTCCACCCCTGCCATCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCCCCGGTGACCAAAGATGTTTCTAAAGCGATATTGCAGCTCTTAGAACAGGGAGAAATAAAGAGTTTAGAAGAGAAATGGCTGAGCCCGATGGGAGAGTGCGCTAACATTAGCTAA 1641 0.4119 MGLVDRESVWIIPESITNLLDSVNKSAISYMEGAIGIKNYYSENSTEYKDFEAQFRRTFHSKYTEEDNRNPGFYGLQAYDSIKIVAQAVDRIASHNSSSSSSGKTLLRGILSSKFLGLSGEIQFQELQLMQNPTLRIVNIGGRSYRELDFWSLEHGFTSRLGEGGNDTSRNTEGLSGVVIWPGKLLRVPKGWNLPTKENPMRIAVPGRTSFSKFVKVDYGENGKPNKYSGFCIEIFDKVLELLDYDLPYEYYPINGTYPDLVQLVYNKTYEAVVGDITLLADRMPFVDFTVPYAESGLSMVVPSKSDESAWMFLKPFTWQMWVVTAAILFYTMLVVWYLERESNPEFHGNWKSQLSTALWFTFSSLFFAHKENLSSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLQPNITDIEWLKKNNMKIGCDGDSFVRTYLERVERFKVENIINVSSEYSYVDVFKNGTIAAAFLELPYEKVYMSKYCKGFSGSTPAIRFGGLGFMFQKGSPVTKDVSKAILQLLEQGEIKSLEEKWLSPMGECANIS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03851 546 Pfam Receptor family ligand binding region 1 140 IPR001828 -
Aip03g03851 546 Gene3D - 210 309 - -
Aip03g03851 546 SUPERFAMILY Periplasmic binding protein-like I 1 192 IPR028082 -
Aip03g03851 546 Pfam Ligand-gated ion channel 318 433 IPR001320 GO:0015276|GO:0016020
Aip03g03851 546 Gene3D - 461 543 - -
Aip03g03851 546 SMART GluR_14 202 538 IPR001320 GO:0015276|GO:0016020
Aip03g03851 546 Gene3D - 1 156 - -
Aip03g03851 546 Pfam Bacterial extracellular solute-binding proteins, family 3 225 537 IPR001638 -
Aip03g03851 546 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 544 - -
Aip03g03851 546 SUPERFAMILY Periplasmic binding protein-like II 177 536 - -
Aip03g03851 546 Gene3D - 310 449 - -
Aip03g03851 546 CDD GluR_Plant 199 536 - -
Aip03g03851 546 Gene3D - 40 132 - -
Aip03g03851 546 PANTHER GLUTAMATE RECEPTOR 3.4 1 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03851 Aip-Chr3 121116420 121118859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03851 1 546 Ion Channels AT2G29120 35.035 3.66e-109 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03851 - - aprc:113859865 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03851 03 121116420 121118859 Aip03g03851 03 121116420 121118859 ECH