Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03843 ATGGCATCCTCGAACAGACATTGGCCAAGCATGTTTAAATCGAAGCCTTGCAACCAGTTTCAGCATGACATGGTCTCAACTACTAATGCATCTTGCCACAGATCAGCCCCTTATAATCCTATTTCAGGATGTGATGAGAAGAGTCCAGAACCGAAGCCAAGATGGAACCCAAAACCAGAACAAATCCGGATTCTGGAGGCGATATTCAATTCTGGAATGGTGAATCCTCCAAGGGATGAGATAAGGAAGATAAGGATGCAGTTACAGGAGTACGGTCAAGTGGGTGACGCCAACGTCTTCTACTGGTTCCAGAACCGCAAATCAAGGAGCAAGCACAAGCTTCGCCACCTCACTAATAATAATAATAGGAATAACAACACTCCATCACCGTCACCGCCGCCGCAGCCACAATTCATCTCAGCCACTACCAACTCATCCTCCTCCTCTTCCTCTGACAAATCATCTCCAAAGTTCGTTCCCGCTTTCACCGATGTGGTGATGCTGCTGCCTAATTCTCCAACAGCCTCTGTGAACCAGAACTACTTTCATCACAACGAAACCAATAATAACAACACTATCAATCATCTTTTGGTTCCTCCACCACTACCGATCGAACCATTCTTCCCTGTGTTCCATAATAGTAGTGGCGTGGTTGCAACTACTGAGATCTCTAATAGTGTGATGAATAATCATCAACCTCCTCATCTTGTTTATCAAGAAAACGTTGATCCTTGCACTGATCTGCTCCTTAGCGAAATCATGAGCCATGGAGGAGTAGAACCGTCCTCTAAGAGATACCATGAACAAGACAAGGCAGCGGCCACCGTCAAGATTAGGCAGCCACAACAATACATCAGCTTCTGTCCGGTTTCAACTCCTCCTCCTTCCTTCACTAACACAACCGCTACACCTATTACTGTTCCATCCCCATTTCAAGGTGCAGGTGGTGGTTGTGGTAGTGGTGATGCGTCAGCGGCGAAATGTACGGTGTACATAAATGACATGGCATGCGAAGTCGATGTGGGTCCCTTTAACGTGCGTCACGCTTTTGGTGATGAGGCGGTGCTTATCGATTCCTCCGGCCACACCGTTCTCACCGATGACTGGGGCGTCACCCTCCACCCTCTCCAGCATGGCTTCTCTTACTATCTCATCTGGTTTCTTTCCTTCTTTCTCTCGCCACCATAA 1188 0.4747 MASSNRHWPSMFKSKPCNQFQHDMVSTTNASCHRSAPYNPISGCDEKSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLTNNNNRNNNTPSPSPPPQPQFISATTNSSSSSSSDKSSPKFVPAFTDVVMLLPNSPTASVNQNYFHHNETNNNNTINHLLVPPPLPIEPFFPVFHNSSGVVATTEISNSVMNNHQPPHLVYQENVDPCTDLLLSEIMSHGGVEPSSKRYHEQDKAAATVKIRQPQQYISFCPVSTPPPSFTNTTATPITVPSPFQGAGGGCGSGDASAAKCTVYINDMACEVDVGPFNVRHAFGDEAVLIDSSGHTVLTDDWGVTLHPLQHGFSYYLIWFLSFFLSPP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03843 395 Gene3D - 52 117 - -
Aip03g03843 395 CDD homeodomain 51 113 IPR001356 GO:0003677
Aip03g03843 395 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
Aip03g03843 395 MobiDBLite consensus disorder prediction 111 156 - -
Aip03g03843 395 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 388 IPR044557 GO:0003700|GO:0050793
Aip03g03843 395 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Aip03g03843 395 SMART HOX_1 50 117 IPR001356 GO:0003677
Aip03g03843 395 SUPERFAMILY Homeodomain-like 46 115 IPR009057 -
Aip03g03843 395 MobiDBLite consensus disorder prediction 138 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03843 Aip-Chr3 121029612 121030999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03843 1 122 Wox Gene Family AT2G33880 76.800 3.89e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Aip03g03843 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03843 - - aip:107633725 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03843 03 121029612 121030999 Aip03g03843 03 121029612 121030999 ECH