Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03835 ATGGCGGGTTTGATTGATCTGAACACCACGGAGGACGATGAAACGCCGTCGTATGGTTCCTACGCTGCTTCTCCATCTTCTTCCTCCTCGCACTCGGGAACAAGCACTGCTTCTGTTTCAGCTTCAGCTCCTGTTGTTCCTGGTTCTTCTTCTAATTCCGTGTGTTTGGAGCTGTGGCACGCGTGTGCAGGTTCAATGATCTCGTTGCCGAAGAAGGGAACTCTTGTTGTGTACTTCCCACAGGGACACTCTGAGCAGCAACTTCACGATTTTCCTCTCTCTAACAACAATAACAGCATCCCACCCCATGTGTTCTGTCGCGTTCTCGATGTTAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTTTTGCTTGTTCCTGAAAATGAGCAAAAATTTCAGGAAGGGGATATTGAGGCTGATGGTGAAGAGGAGGACACGGATGCTGTGATGAAGGCAACAACACCCCACATGTTTTGCAAGACTCTGACAGCTTCTGATACCAGCACTCATGGTGGATTCTCAGTTCCCCGTCGTGCAGCTGAAGATTGCTTTCCTCCGCTGGATTATAGTCAACAGAGGCCATCACAAGAGCTTGTAGCAAAGGATCTGCATGGCCGGGAATGGAAGTTTCGACATATTTACAGGGGGCAGCCACGAAGGCATTTGCTTACCACTGGATGGAGTGCATTTGTGAACAAGAAGCAGCTGGTGTCTGGAGATGCTGTCCTGTTTCTTAGGGGGGCAGATGGTGAACTGAGATTGGGAATTCGTAGGGCAGGTCAATTGAAAAGTGATGGTAAATTTTCAGTTCTCCCTCACCAGCAGTTGAATCATAGCACTCCTGTGGAAGTGATTAATGCTCTGTCTTCAAGATGTGCCTTCAGTGTTCACTATAACCCAAGGGTTAGTTCATCAGACTTCATCATACCTGTCCACAAATTCTTGAAGAGCCTTGATTATTCATATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACCGAAGATGCTGCAGATCGAAGAATCACAGGATTAATTATTGGGATTAATGATGTTGATCCTGTCAGATGGCCCGGATCAAAATGGAGATGCCTGCTGGTAAGGTGGGATGACTTAGAAACCACACGGCATAACAGGGTTTCTCCATGGGAGATTGAGCCATCAGGTTCTGCTTCCACTGCCAGTAGCCTGATGACAGCTGGTTTGAAGAGGAGCAAGATTGGATTGCCTTCAGCACAGCTAGAATTTCCAGTTCCCAATGGGATCAGTACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAATCCTGTCAATGGTATTAATGCTCAGTGTCACCAATTATCGGAACTAAGAAGGTGCTATCCTGGTACAACCTATCCTGGATTTACCACAGCAGGACATGGTACAATCCCACAAGTGAGTTCGGATGCTTCCTGCAATGGCATAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAATGGTCGCCTCGGAGCTTTTGATGGTTACCAGATGCTAAGGTCCAGAAATGGATGGTCTGCGCATATGAATAGCAATTCTTCTCATTTGCATGCACCCTTTCCATCTGGTCAACTGTCATCTCCATCATCCGTGTTGATGTTCCAGCAAGCATTTAATCCAGTTTCAAACTCTGATTATAGCAACAAAGCTAATCAGGTGAAGGGTGGTAAAGCACTTCAACGAGGTTCTTATGCTTCTGAAGTTGATGGTGGAACGAATGCTTCCTTCCCATCTTATGAGACAACTTTCCATGGGAAAGCTCAGGAAGGAAAAAATTCTTTCACTTTTTTAAATCTGCATGATCAGTTGGGTGGTAGTCCACGTTCACCTGATTCAAGATCAGAGCCGAGAGGAAGTCAAGAGCTGGTTTCTTCATACATTGCCAATGAAGGGCATTCACGGTCAACTGCAGCATTGGTTTCAAAGTTAGAAGAAAGCACAATGCATGTTAGCGATGATCACTGGGATAAATGTAGCAAAAGTGCAATGTCTTTGGCATAA 2109 0.4566 MAGLIDLNTTEDDETPSYGSYAASPSSSSSHSGTSTASVSASAPVVPGSSSNSVCLELWHACAGSMISLPKKGTLVVYFPQGHSEQQLHDFPLSNNNNSIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENEQKFQEGDIEADGEEEDTDAVMKATTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNKKQLVSGDAVLFLRGADGELRLGIRRAGQLKSDGKFSVLPHQQLNHSTPVEVINALSSRCAFSVHYNPRVSSSDFIIPVHKFLKSLDYSYSVGMRFRMRFETEDAADRRITGLIIGINDVDPVRWPGSKWRCLLVRWDDLETTRHNRVSPWEIEPSGSASTASSLMTAGLKRSKIGLPSAQLEFPVPNGISTSDFGESLRFQKVLQGQEILGVNNPVNGINAQCHQLSELRRCYPGTTYPGFTTAGHGTIPQVSSDASCNGIGFGESFRFQKVLQGQEILPSQPYGNGRLGAFDGYQMLRSRNGWSAHMNSNSSHLHAPFPSGQLSSPSSVLMFQQAFNPVSNSDYSNKANQVKGGKALQRGSYASEVDGGTNASFPSYETTFHGKAQEGKNSFTFLNLHDQLGGSPRSPDSRSEPRGSQELVSSYIANEGHSRSTAALVSKLEESTMHVSDDHWDKCSKSAMSLA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03835 702 MobiDBLite consensus disorder prediction 635 656 - -
Aip03g03835 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip03g03835 702 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Aip03g03835 702 MobiDBLite consensus disorder prediction 1 43 - -
Aip03g03835 702 Gene3D - 325 399 - -
Aip03g03835 702 SMART B3_2 162 264 IPR003340 GO:0003677
Aip03g03835 702 SUPERFAMILY DNA-binding pseudobarrel domain 156 278 IPR015300 -
Aip03g03835 702 Gene3D - 160 263 IPR015300 -
Aip03g03835 702 PANTHER AUXIN RESPONSE FACTOR 46 662 - -
Aip03g03835 702 Pfam Auxin response factor 289 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip03g03835 702 MobiDBLite consensus disorder prediction 10 43 - -
Aip03g03835 702 CDD B3_DNA 160 262 IPR003340 GO:0003677
Aip03g03835 702 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03835 Aip-Chr3 120869570 120874581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03835 161 518 B3 DNA Binding Superfamily AT2G33860 58.953 3.65e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip03g03835 B3 8.7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03835 K14486 - gmx:100808119 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03835 03 120869570 120874581 Aip03g03835 03 120869570 120874581 ECH