Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03825 ATGGAGGGGGAGGGTGGTTCAGAGGGAGAGAATAATCAGAGAAGGGGTGGCACAGATGATAATAGCAATGAAAATATCAATGGAAGCAATAGCAAAGTTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACACCCTATCAACTCGAAACCCTCGAGAAAGCTTATGCCTTGGAGACGTACCCTTCTGAGGCTATGAGGGCCGAGCTATCGGAGAAATTGGCGTTGTCTGATCGGCAGCTGCAGATGTGGTTCTGCCACCGGAGGCTGAAAGACAAGAAAGACTTGCCAACCAAGAAGCCGCCGAAGAAGGCCGTGGAGAAAGTGCGGGAGCCAGAGCCTGAACCAGTGCCGGATTCCCCAGTGGATGACCACAGATTGGGCCCCGAGCTAGGCAATGAGAATGGATCCGGGTCTGGTTCTGGGTCAAGCCCGTTTACCCGGTCAGAGTCCAGGAGTGTGGCGCCGCGGGGTTATTATGAATCACAGCAGGCTGCGCTCGAGCTCAGAGCAATTTCTTGTGTGGAGGCACAGTTAGGGGGGCCATTGAGGGAAGATGGACCCATTCTAGGAATAGAGTTTGATGCATTGCCACCAGATGCATTTGGGGCGCCCTTAGCAACCATTGCAGAACAGCAGAAGCGACCAAGTCATGCCTATGACAGTAAAGTTTATGAAAGACATAATGCTAGACCAAATAAGGCTATGGCAAGGGCATTCCATGAATATCAATTTCTACGGAACCAGGCTGGCCCCAGGTCTGATGGTTTTGGACAATATCCCCAACATCATTTACATGATCCGATGGAAGGTCCTGCAAGAAATACCCATTTTGCACATGGAACTGAACAGTTACATAGAAGTCATGCTACCCAAGGTCATTCTTCTCGAGTCCGTATTTTACCTCAACAAGATAAGCAAGGGATTCCTCATCCATCTCCTCCTCAAGATGATGATGTTGCTTCCCAAAAGCAATTGCACACAAATGTAGTGAACACTGGAGTGAACTCTCATTCTACTGATTACCAAATTGTTGGGCCCGAAAATCCCTATAACCCACCAGGTGGACAAGTTTCCCATATCACTACAATGCAGATTGAGAAAAAACGAAAGAGTGATGATGCTAGAAGTGCAAGGGAAGTTGAAGCCCATGAGATGAGGATCAAGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAATGAAGAGCGAATGAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAGGAAGGAAGAAGAAAGGTTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATTAAGGCGTGAGCAAAAACGTGAACTCGAACGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTGAAAGCTGAGAAAATGAGGCAAAAGGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGACGCAAAGCTGCCTTGGAAAAGGCAACTGCTCGTAGAATAGCTAAGGAATCCATGGAACTAATTGAAGATGAACAACTGGAATTGATGGAGCTTGCTGCTTCAAGCAAGGGATTGTCCTCTATAATTCATCTTGATTTTGATACTCTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCTAAGAGTGTAAAGCTAAGAAAACCATTTGCGATCCAACCCTGGATTAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAAATTTTTGATTACTTTTGCTGATATTCTTGAGTTGTGGCCTTTTACTCTCGATGAGTTTGTGCAAGCTTTTCATGATTACGATTCAAGACTGTTGGGTGAAATACATGTTGCTCTCCTTAAGGTGATAATAAAAGACATTGCAGATGTTGCAAGGACACCTTCCACTGGATTAGGAATGAGCCAAAATGGTGCAGCTAATTCAGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGTAATTGGCATAAGCACTTAAATCAGTTGACATGGCCAGAAATTTTTCGACAGCTAGCATTAGCAGCAGGTTATGGACCACAGTTGAAGAAAAGAAATATTACATGGTCATATGCAAATGATAAAGATGAGGTTCGGCACCGCTTAACTCCTGGAACAGTAAAGTTTGCTGCATTTCATGTTCTCTCACTTGAAGGTGGTGAAGGATTGACAGTACTAGAACTTGCAGAAAAAATTCAGAAATCTGGCCTTCGGGACCTGACAACTAGCAAGACACCAGAGGCATCGATTTCTGTCGCTTTGACAAGAGATGCTAAGCTTTTTGAGAGAATAGCTCCATCGACATATCGCGTACGTACTGCATTTAGAAAGGATCCGGCGGATGCTGAGTCTATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGACGCTGATGAGGTTGAACGAGAAGACGATATTGAAAGAGATGATGTTGAAAGATATGATGATGTAGAAAGAGAAGAAGAGTCAGAAAGTGAAGAAGTTGATGATGATCCTGAAGTTGACGATTTGCTAGGTCCTTCAAGTGCTAACAAAACATCTGAACTGTGTGATGATTTCTCATCTATTGGAAAAGAAAGTTTGGGTCATAAGGTAGAACTTATTCAAGATCAGTTTGAGAAGGATCTTCCGGAGAATGGTACTAAGGATGTGGATGGTTCTAAAGATGCTCATCTTCCAGATGCTATCACTGGACAACCCGTTATTACAAACTTTGAGGAAGATAATATGGAAATTGATGAAAGCAAGACTGGAGAGTCATGGGTTGAAGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAACGTTTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGCGTTGTTCTCGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCTCAGATAGATAAAATTCGACTGAGAGATGATAATGTAAATAAATCAGATTTTCCATCTATCAATGGGAATAAAGTTGAACCACAATACACAAGTCCTGCTGTGGGGGGGAACCAAAGCCCATTGCTTGACATAAACATTGACAATAATAATAATAATGAGGCATCGCCTAGCACTGCAGAAAATAAAAAAGCTGCAGTTGTACAGAACCTTGCCATGGAAAAGCCCTCAATAGGTCAAGATTACTGCATTGGTCCAGATAACCCTCAAACTCAACTATCTGCTCCCTATTCGAAAAGGTCTCGTTCTCAGTTGAAATCATATATTTCTCACATGGCAGAAGAGATGTCCGTATACAGGTCTTTACCCCTTGGTCAAGATCGCAGACATAATCGTTATTGGCAATTCGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCTTGATGGCAATTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTTAATTCACTGGATTTGCGTGGGATCAGGGAATCTCATTTGCGCATAATGTTGCAAAAGATTGGAAGTTCCTTCAAAGAAAATGTTAGGAAGAATGCACAATCTGCCAATATTGGAAGCAGAGATGAAAGTAATATTAAAAATGAAGCTGATGAAGCAGAGTCCAGTCCTGATTGCCATGCATTGTCTGACAGTCCCAGCAGTACACTCTGTGGCTTGAACTCTGATACATCTGAAACTTCTTCATCATTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGGTGCCTTGAGAAGGTATCAAGATTTCCAGAAATGGATGTGGAAAGAATGCTATAACTCATCCATATTATCTGCAATGAAATATGGGAAAATGAGATGCAAACCTCAGGTGGACATCTGTGATATCTGCCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAATTGTTGCCATCGTACTTTTCCCTCAAATAACGGATTTAATTTTTCAAAACATATATTTCAATGTGGGGGCAAATTGTCCAAAGATATTTGTATTCTGGATTGTTCTCTTCCCTTGAGGACAAGGTTGCTTAAGGCCCTGCTGGCTTTTATTGAGGCATCTGTTCCCTCCGAAGCGTTTCAATCAACTTGGACAGAAGATACTAGAAGGCATTGGGGTTTGAAGTTAAGCAAATCATCTTCTGTCGAGGAACTTCTTCAGTTATTGACTGTGTTTGAGAGAGCAATAAAGCGAGATTTTTTATCGTCATCCTTCTCAACAACACAAGAATTGTTGGGATCAAGCAGTATGTCAGAGAGTGCTTTTACCGATCCTGAATCTGTTGCTGTACTTCCATGGGTTCCACAGACCACCTCAGCTGTGTCTCTCAGACTCTCTGAGTTTGATGCGTCCATTAGCTATGTTCAGCTTGAAAAATCTGAGCATCGCAGGGAGAAAGAAACTATAGAATACATGAAGCTTCCTTCAAGATCTAATCCTTTCAAATCTAGTAGAGTAGTGGAACCAGCAGACTTGGACCATGATGAATTCATGAAAGTTAGGTCTGCTCCCATGAAAATTGTAAAAAGTGGCAATAAACGTGGGCGGGGGAATAGTGATAAAGGACGGGGTAAAAAGATAGCTAAAAGAATGCATGATTCCAAACAAGATACTGGCCGCCGCATTGTTAAGGTCACAGAGAATCTTAGTCAAAGACTAAAACAGCAGGGGCAAGGAGCACAAGGACAAAGTGGTGGACGTGGTCGCCGAACTGTCAGGAAAAGACGAGTGGAAAAGAGGGCTGTTGAAGATTTGCTGCTGGGCCACAAGGCTGGCACACACAGTTCCAATATTGTTAGAGAACCATTGAGAAACCTGGATGAGGAATGGGATGATGATGAAAAGGCAAGTCCCATGACTTCCATCCACATGGGGGCTGCCGACAATAGTAACAGTGCCGAAGAGGCAGATTCTGATGACAATGCTCAAGTAGCAGAGTCCAACGACAATGCTCAAGCAGCAGATTCGGATGACAATGCTCAAGAAGTGGATTCCGATGACAATCCTCTAGAAGTGGACTCAGATGACAATGCTCAAGCAGTGGACTCAGATGACAATGGCCAAGCAGTGGAATATGATCAAGGAAACTGGGGAATAGGTTTCAATAACACCCCCAACAGGTGGAGTAGGGATGTGGTTGGAATGATTGATGAAGATGTAGAAGCTTCAGACGAGGACAATGACAACAATGTTGGGCTTGAAGAGAACGAAGAGGAAGAATCAGAGGGTGATGATGTTATGAGTGAGGAGGGTTCAGATGGAATTGCAGATAGAGTTTTGAATGATGACTCGGACTCTGATGATTCTGAAGATTCATCTGATTAG 5352 0.432 MEGEGGSEGENNQRRGGTDDNSNENINGSNSKVANSNEGQSKPKRQMKTPYQLETLEKAYALETYPSEAMRAELSEKLALSDRQLQMWFCHRRLKDKKDLPTKKPPKKAVEKVREPEPEPVPDSPVDDHRLGPELGNENGSGSGSGSSPFTRSESRSVAPRGYYESQQAALELRAISCVEAQLGGPLREDGPILGIEFDALPPDAFGAPLATIAEQQKRPSHAYDSKVYERHNARPNKAMARAFHEYQFLRNQAGPRSDGFGQYPQHHLHDPMEGPARNTHFAHGTEQLHRSHATQGHSSRVRILPQQDKQGIPHPSPPQDDDVASQKQLHTNVVNTGVNSHSTDYQIVGPENPYNPPGGQVSHITTMQIEKKRKSDDARSAREVEAHEMRIKKELEKQDNLRRKNEERMRKEMERQDRERRKEEERLMRERQREEERLRREQKRELERREKFLLKENLKAEKMRQKEELRKEKEAERRKAALEKATARRIAKESMELIEDEQLELMELAASSKGLSSIIHLDFDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWINSEENVGNLLMVWKFLITFADILELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIADVARTPSTGLGMSQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALAAGYGPQLKKRNITWSYANDKDEVRHRLTPGTVKFAAFHVLSLEGGEGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRTAFRKDPADAESILSEARKKIQIFENGFLAGEDADEVEREDDIERDDVERYDDVEREEESESEEVDDDPEVDDLLGPSSANKTSELCDDFSSIGKESLGHKVELIQDQFEKDLPENGTKDVDGSKDAHLPDAITGQPVITNFEEDNMEIDESKTGESWVEGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKIRLRDDNVNKSDFPSINGNKVEPQYTSPAVGGNQSPLLDINIDNNNNNEASPSTAENKKAAVVQNLAMEKPSIGQDYCIGPDNPQTQLSAPYSKRSRSQLKSYISHMAEEMSVYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYLDGNWRLIDSEEAFDALFNSLDLRGIRESHLRIMLQKIGSSFKENVRKNAQSANIGSRDESNIKNEADEAESSPDCHALSDSPSSTLCGLNSDTSETSSSFKIELGKSESEKKGALRRYQDFQKWMWKECYNSSILSAMKYGKMRCKPQVDICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHIFQCGGKLSKDICILDCSLPLRTRLLKALLAFIEASVPSEAFQSTWTEDTRRHWGLKLSKSSSVEELLQLLTVFERAIKRDFLSSSFSTTQELLGSSSMSESAFTDPESVAVLPWVPQTTSAVSLRLSEFDASISYVQLEKSEHRREKETIEYMKLPSRSNPFKSSRVVEPADLDHDEFMKVRSAPMKIVKSGNKRGRGNSDKGRGKKIAKRMHDSKQDTGRRIVKVTENLSQRLKQQGQGAQGQSGGRGRRTVRKRRVEKRAVEDLLLGHKAGTHSSNIVREPLRNLDEEWDDDEKASPMTSIHMGAADNSNSAEEADSDDNAQVAESNDNAQAADSDDNAQEVDSDDNPLEVDSDDNAQAVDSDDNGQAVEYDQGNWGIGFNNTPNRWSRDVVGMIDEDVEASDEDNDNNVGLEENEEEESEGDDVMSEEGSDGIADRVLNDDSDSDDSEDSSD 1783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1203 1217 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 809 848 - -
Aip03g03825 1783 CDD homeodomain 44 98 IPR001356 GO:0003677
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1 52 - -
Aip03g03825 1783 ProSiteProfiles DDT domain profile. 560 619 IPR018501 -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1652 1667 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 18 48 - -
Aip03g03825 1783 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 929 972 IPR028942 -
Aip03g03825 1783 Pfam HB1, ASXL, restriction endonuclease HTH domain 708 776 IPR007759 GO:0006355
Aip03g03825 1783 ProSiteProfiles HARE-type HTH domain profile. 708 777 IPR007759 GO:0006355
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1219 1239 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 98 161 - -
Aip03g03825 1783 Gene3D - 26 100 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1552 1574 - -
Aip03g03825 1783 Pfam DDT domain 561 616 IPR018501 -
Aip03g03825 1783 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1108 1180 IPR028941 -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1522 1551 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1668 1689 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 255 280 - -
Aip03g03825 1783 SMART testlast3 560 619 IPR018501 -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1727 1759 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1610 1627 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 138 155 - -
Aip03g03825 1783 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Aip03g03825 1783 SMART HOX_1 41 103 IPR001356 GO:0003677
Aip03g03825 1783 MobiDBLite consensus disorder prediction 397 442 - -
Aip03g03825 1783 PANTHER HOMEOBOX DOMAIN PROTEIN 702 824 - -
Aip03g03825 1783 PANTHER HOMEOBOX DOMAIN PROTEIN 12 701 - -
Aip03g03825 1783 SUPERFAMILY Homeodomain-like 29 98 IPR009057 -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1193 1239 - -
Aip03g03825 1783 Pfam Homeodomain 42 98 IPR001356 GO:0003677
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1605 1783 - -
Aip03g03825 1783 Coils Coil 385 487 - -
Aip03g03825 1783 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1662 1783 IPR044977 GO:0006357
Aip03g03825 1783 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 702 824 IPR044977 GO:0006357
Aip03g03825 1783 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 826 1654 IPR044977 GO:0006357
Aip03g03825 1783 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 12 701 IPR044977 GO:0006357
Aip03g03825 1783 MobiDBLite consensus disorder prediction 98 134 - -
Aip03g03825 1783 PANTHER HOMEOBOX DOMAIN PROTEIN 1662 1783 - -
Aip03g03825 1783 PANTHER HOMEOBOX DOMAIN PROTEIN 826 1654 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 1518 1586 - -
Aip03g03825 1783 MobiDBLite consensus disorder prediction 807 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03825 Aip-Chr3 120625088 120633447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03825 4 1715 Homeobox Transcription Factor Family AT1G28420 46.563 0.0 1285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aip03g03825 WSD 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03825 - - ahf:112733536 3068.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03825 03 120625088 120633447 Aip03g03825 03 120625088 120633447 ECH
Aip10g00411 10 4081750 4090297 Aip03g03825 03 120625088 120633447 ECH
Aip03g03825 03 120625088 120633447 Aip10g00411 10 4081750 4090297 PCT