Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03801 ATGCGTAAAGTAAAGGAGAAAAGGGAAAGGGGTTATGCGAAGGGAGAATGGGAGAAAGGGGTTCGAGAAGAAGAGGGGGAAGGGTTCTCGCCGTCGCCGTCGCCACCGCTGCTCTTCGTTGCTGTTGCCGTTCAACAGCATCAAAATCAGTCGCAGTTCCGCCTTCAAATGTCAGGGCCGCCGTTGCTCGTCGTTGTTTGGTGGTTGGATGTCGCCGCTGCTCCTCTGGACTCGACGGAGGTGTTCGATGGCCGTTGCTCGTCGTCGTTCGGGCTCAAGAAATATATTCTCAACATCCTTAACTCTGAGAAGCAGCTGTGGGGACTGATCCATTCTAAAGGCCTATTAGACTCCGAACTTAGAAAACACTATAGAAACAATGCTGAAATGTCGACACTTTTGTCATCGTTTCTTGGTTTGTATGGGGGATCTGGCCAGCCGCATGTTCTAAGCTCAAAATCGGAAGGCACGCAGAGAGCTCGCAGCGGCGGCATCACAATGAAGTTCAACATTGCTAATCCCACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAGCTACGTGCATTTTGGGACAAGAGGATCTCACAGGAGGTCCTTGGTGATGCTCTTGGAGAGGAATTCAAAGGCTATGTCTTCAAAATCACCGGTGGCTGTGACAAGCAAGGATTCCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGTCTTTTGCTTCACAGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGGAGAAAGTCTGTTCGCGGGTGCATTGTCAGCCCTGATCTCTCAGTTTTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATCTTCCCGGCCTGACTGATGTTGAGAAGCCAAGGATGAGGGGGCCAAAGAGAGCATCCAAAATCCGCAAGCTGTTCAACCTCTCAAAGGAGGACGATGTGAGGAAGTATGTTAACACCTACCGCAGAACCTTTACAACCAAAAATGGCAAAAAGGTGAGCAAGGCTCCCAAGATACAAAGACTGGTGACACCTTTGACACTCCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAAGCAGCGGAGTATCAGAAGTTGCTTGCATCGAGGTTGAAGGAACAGAGGGAACGCCGTAGTGAGAGCTTGGCCAAGAGGAGATCCAAGCTTTCCAGTGCGGCTGCCAAGGCAACTGCATAG 1245 0.5052 MRKVKEKRERGYAKGEWEKGVREEEGEGFSPSPSPPLLFVAVAVQQHQNQSQFRLQMSGPPLLVVVWWLDVAAAPLDSTEVFDGRCSSSFGLKKYILNILNSEKQLWGLIHSKGLLDSELRKHYRNNAEMSTLLSSFLGLYGGSGQPHVLSSKSEGTQRARSGGITMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAAKATA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03801 414 ProSitePatterns Ribosomal protein S6e signature. 218 229 IPR018282 GO:0003735|GO:0005840|GO:0006412
Aip03g03801 414 SMART Ribosomal_S6e_2 167 294 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aip03g03801 414 MobiDBLite consensus disorder prediction 385 414 - -
Aip03g03801 414 Pfam Ribosomal protein S6e 167 294 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aip03g03801 414 Coils Coil 355 382 - -
Aip03g03801 414 MobiDBLite consensus disorder prediction 1 32 - -
Aip03g03801 414 MobiDBLite consensus disorder prediction 8 26 - -
Aip03g03801 414 Gene3D - 299 400 - -
Aip03g03801 414 PANTHER 40S RIBOSOMAL PROTEIN S6 167 410 - -
Aip03g03801 414 MobiDBLite consensus disorder prediction 385 401 - -
Aip03g03801 414 Hamap 30S ribosomal protein S6e [rps6e]. 51 283 IPR020924 GO:0003735|GO:0005840|GO:0006412
Aip03g03801 414 PANTHER 40S RIBOSOMAL PROTEIN S6 167 410 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03801 Aip-Chr3 120340493 120350089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03801 167 414 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.581 8.20e-119 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03801 K02991 - gmx:100801194 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03801 03 120340493 120350089 Aip10g00435 10 4314912 4316938 PCT