Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03784 ATGGTGATGACTCTTAGAAAGGGATTGTGGCATTTCCATTGTGGACGTCCAATGCCCTTTGCTACTTTCGTCAACAACTTTTCAATAAAGCGGTTACGTTCTGCTGCAATAGGGTTTCGATTGGCTTCACTTCAATGTGGATTGGTTCATTCTGAGACACCAGTGACAATGGATGGTGTGTTGGAAGTGATGACCATGGAAATGAGAATGGAGCAAGGAAAGATtCGACCATTACCGAAAGCCTCGCTCCACTATTTTCCCTTTTTCCAAACGCCACCTCTCACAATTCTCGTCTTCCCTCACACACACAACCACTTTCTCTCTCATTCCGTTGCCATTTGTTTTTTCTTCGTAACCTCCGTCCGCTGCCCCCTATCGCTCCTAGAACCTTCTCTCCTCTCACGGGGTAAAGAAGCATTGATAAAAAAATTCCAAGGGTTTTACACAGAAAATTATAACAATTCCAATGGTTGTTTCGATTGCAACATATGCTTAGACTTTGCAAACGAGCCAGTTGTCACGCTTTGTGGCCATCTCTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAGAGCGCTTCCCTTGCCTACAACCAGCAGCCGCTATGCCCTGTCTGCAAAGCTGAAATATCCCATGCCACGATGGTTCCCCTCTACGGCCGTGGCCACAGCAACCGTGAAGAGAAGGCGGCCTCATGCAGGGACATTTGTGTCCCGCCGAGGCCACCTGCTTCTGGTCCCCTGTCTTTGCTGTCCATGTCTCAAAACGGCCAGCAGCGGCTTCCTTATCGGAATCCTTACCAGGGTCAACACTTTAGCGTTGCGCAAGACGAGGACAACGCATGGCAACTCAGAAAGTTTGTATGGATACCCAAATTCTTATCACACGATGGGAAGTATTAG 906 0.4823 MVMTLRKGLWHFHCGRPMPFATFVNNFSIKRLRSAAIGFRLASLQCGLVHSETPVTMDGVLEVMTMEMRMEQGKIRPLPKASLHYFPFFQTPPLTILVFPHTHNHFLSHSVAICFFFVTSVRCPLSLLEPSLLSRGKEALIKKFQGFYTENYNNSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSASLAYNQQPLCPVCKAEISHATMVPLYGRGHSNREEKAASCRDICVPPRPPASGPLSLLSMSQNGQQRLPYRNPYQGQHFSVAQDEDNAWQLRKFVWIPKFLSHDGKY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03784 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 149 276 - -
Aip03g03784 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 221 IPR013083 -
Aip03g03784 301 SUPERFAMILY RING/U-box 157 220 - -
Aip03g03784 301 ProSiteProfiles Zinc finger RING-type profile. 161 208 IPR001841 -
Aip03g03784 301 CDD RING-HC_AtRMA_like 159 209 - -
Aip03g03784 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 149 276 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aip03g03784 301 SMART ring_2 161 207 IPR001841 -
Aip03g03784 301 Pfam Zinc finger, C3HC4 type (RING finger) 161 207 IPR018957 GO:0046872
Aip03g03784 301 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03784 Aip-Chr3 120140671 120152631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03784 149 249 C3H Transcription Factor Family AT4G27470 54.630 2.70e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03784 K10666 - gmx:100779793 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03784 03 120140671 120152631 Aip10g00459 10 4552260 4560656 PCT