Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03782 ATGGATAGTAGTAATGTGTTAGAACTCAACCTTGGCGTAGGGAATAATGGTGGTGGCCAAGTAGGGCAGTCGGTGAGGCCACGGTGTCCGGCACCTTTTCTTTTGAAGACTTATGATTTGTTGGAAGAAAGCGGCAACGGCGGCAAGATAGTTTCATGGAATGGAGATGGGAGTGGTTTTATTGTATGGTCTCCGGCTGAATTCTCTGACCTCACCTTGCCTAGATTTTTCAAGCACAATAACTTCTCAAGCTTCATTCGCCAATTGAATACATATGGATTCAAGAAAATATCATCAAAAAGATGGGAGTTCAAGCATGAGAAATTTCAGAGAGGGTGTAGGGATATGCTAGTTGAGATCACAAGGAAAAAGTGCGAGCCTAGCGTGTTCCCTTCATACCTCAAGTCTTCTTCAGAGGAAAATGCAATCACTTCTAATAATTCAATGGAAGAAAACAACAATAATAGCCATCAACTACTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGGTTGGAGCTGCAAATGCAGATAGCTGAGTTTAAATCACTTGAAATGAAGTTGTTAGAGTGTCTCTCTCAAGTTATGGACAACCACCAAAATAAAAGTCGGGGACAATGTTAG 624 0.4151 MDSSNVLELNLGVGNNGGGQVGQSVRPRCPAPFLLKTYDLLEESGNGGKIVSWNGDGSGFIVWSPAEFSDLTLPRFFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRDMLVEITRKKCEPSVFPSYLKSSSEENAITSNNSMEENNNNSHQLLMEENKNLKKERLELQMQIAEFKSLEMKLLECLSQVMDNHQNKSRGQC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03782 207 Coils Coil 150 184 - -
Aip03g03782 207 Pfam HSF-type DNA-binding 33 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g03782 207 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g03782 207 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g03782 207 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g03782 207 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g03782 207 Gene3D - 26 124 IPR036388 -
Aip03g03782 207 SMART hsfneu3 29 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g03782 207 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 22 203 - -
Aip03g03782 207 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 203 IPR027725 -
Aip03g03782 207 SUPERFAMILY "Winged helix" DNA-binding domain 30 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03782 Aip-Chr3 120122475 120124623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03782 29 184 HSF AT5G62020 40.884 3.34e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip03g03782 HSF_DNA-bind 1.1e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03782 K09419 - gmx:100789792 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03782 03 120122475 120124623 Aip03g03782 03 120122475 120124623 ECH