Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03775 ATGTACGTTAATTCCATGAGAAAGTCCTTCAAGGACTCCCTCAAGCTCCTTGAAGCTGATATTCAACACGCCAATACCCTGGCGTCAGATTTTTCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTCTTTCTTTTTTTGGTGCAATGGACTGATTGTCACCTTGCGGGAGCCCTGGGATTGTTGAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACCACCATGTCTACCCAGGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCTTTGTTGCAACTTCAAAAGGGGGTCACTGATACGGAGGATAAGAAACAAAAGGCTATGTGCATGGAGAGGTATCGTAAAAGAGATGATGAGGAGTATTGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAAATGAATGGCAAAGTTGTGTTGCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGTACTCCCTCCCCTCCTTCCCTCTCTCTTTCTCTCTCTCCCCCCAAAAGAATGTGAATAATTTGTCTACTACTTTCTTCGATATGTTTTACCTGTGTTTCTGTGATAACAAATTTACCTCTATGGTTTAG 663 0.4299 MYVNSMRKSFKDSLKLLEADIQHANTLASDFSREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTQERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAMCMERYRKRDDEEYWQSSDIDIEREDECGICMEMNGKVVLPNCNHAMCLKCYREWYSLPSFPLSFSLSPQKNVNNLSTTFFDMFYLCFCDNKFTSMV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03775 220 Pfam Zinc finger, C3HC4 type (RING finger) 151 180 IPR018957 GO:0046872
Aip03g03775 220 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Aip03g03775 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 204 IPR013083 -
Aip03g03775 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE 4 197 - -
Aip03g03775 220 SUPERFAMILY RING/U-box 138 182 - -
Aip03g03775 220 PANTHER RING FINGER PROTEIN 41, 151 4 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03775 Aip-Chr3 120088612 120092337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03775 K25840 - gmx:100777318 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03775 03 120088612 120092337 Aip10g00468 10 4657417 4660316 PCT