Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03758 ATGGGTTTGAGTTCCAAGCAGGTTTCAAGGAGTAGTAGTGGACTTGATTGGAACCAAGCCTTATTGGAATCACAGAACTTGGAGCTTCCAATTCCAAAGCCTCATCATATCATGAAGAAACAACAACAGAATAATCAATCATCGTCATCATCATCAGAGCCAATGAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTCTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCTATTTATGTAGAACTTGCAAGAGGCACTGGACCAAAGGTGGAACTTTGCGCAATGTTCCAGTTGGTGGTGGAAGAAAGAACAAAAGGGTAAAAAAGTCAACTGCCACTGCAACCGCCACAGCCACCGCCACCACCTCTACTTGCACCACAAGCATCAGAATTCAAGCTCCTTCTCTTGCAATGGATGATCACAAAAACATAGCTTCTCCTTCTCCTTCTTCCTCTTCTTCCCTCTATCAAGTTTCAGTTTCAACCTCTTTGCAATCCACCAATGTTTATAATAACTGTGGTGGTGAAGAGTTTAAAGCAATAGAGGAACCAAGCATGCACAGCATAATGGCTACCACTACTTCTACACAACCATGGGAGATACCAGCAGCAACAATGGAAATGTCAAACTATTGGGGTTGGGAGGACATTGATTCTTTGGTCTCTACTGATCCGAACAACAATCATCCTTGGGATGATTCTGATATCAAACCCTGA 723 0.426 MGLSSKQVSRSSSGLDWNQALLESQNLELPIPKPHHIMKKQQQNNQSSSSSSEPMKCPRCESTNTKFCYYNNYNKSQPRYLCRTCKRHWTKGGTLRNVPVGGGRKNKRVKKSTATATATATATTSTCTTSIRIQAPSLAMDDHKNIASPSPSSSSSLYQVSVSTSLQSTNVYNNCGGEEFKAIEEPSMHSIMATTTSTQPWEIPAATMEMSNYWGWEDIDSLVSTDPNNNHPWDDSDIKP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03758 240 Pfam Dof domain, zinc finger 54 107 IPR003851 GO:0003677|GO:0006355
Aip03g03758 240 PANTHER OS06G0284500 PROTEIN 40 204 - -
Aip03g03758 240 MobiDBLite consensus disorder prediction 37 57 - -
Aip03g03758 240 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 204 IPR045174 GO:0003700|GO:0006355
Aip03g03758 240 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Aip03g03758 240 MobiDBLite consensus disorder prediction 38 57 - -
Aip03g03758 240 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03758 Aip-Chr3 119843468 119844415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03758 55 119 C2C2-Dof Transcription Factor Family AT5G60200 68.182 3.44e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip03g03758 zf-Dof 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03758 - - gmx:100806358 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03758 03 119843468 119844415 Aip10g00481 10 4784777 4786565 PCT