Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03737 ATGGCGGATGATGACGTGAACTTTTCGGAACTGTTCGATGGTGACGATGACGATAATATGTGCTATATCGATTTAACGACGGTGATGCAGGTTCTCAATGAGGATGACGACCCTCTGCAGAGTAGTCCTGAAGATTTTTCATTACAAAATGGTTCATCTGGTGAATCTGGCGTCCATGATTCTTTTCAGCTTCAGAATGTTTGTCAAATGTTAGAAGAAGAACCACATGTTTCTAGGTTGGAGGTGGATTCAGCCACAGACTGCTCTCCTTTCTGCTCAGATGTGTCGGATTCTGGGGCCAAAGATTCAGTTCATTTTTCAGCGAATCCTGTGCTTGAGCGTGAACATGAAAATCAGGGACTTCCAAGTCAGGCTTGCTCTTCCACGGAAAAGACAGGGCTTTCTAAATTTGAGACATCTAGTTTTGGTATGGAAACTAGTTTCCCTGAGGCATATTCAAATAATGTATCAGTCTGTCAGGACTATTTGAATAAGAGTATGTGGAAGAGTGGAAATGAGAGGCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCTCACAGTTCTATCATTGAGAATGGTGATTTAAATTTTGAAGATTGTGTTGAGGATGCTGTTCGAGGTGCTTATGGGCAACAAGAAAGTGACTTGTGCACATCTTTTCAAATATCTGATATGGAAGCTGATGATTCTTTGCATGCTTCAACTTCAATTGATTCTGCTCTTTATCAAGGTTCCCATTTTCCTAGCGATTTGTGTGGTGACTATGCATATCCAAATTATCATCAGGGAGGAACATATGATAGATCGTTTGCCAATGACCCAACTTTAAGGTTTATCCCTAATGGTATCGGTTCCAAGTCATGGACAAATAAAGAAATGATGACTAACCTGAAGGCTGAAAATATGGAGTTCTGTACAGATATGGCCCAAATCAGTGGTGGCATGCACTCAGTTAATACTGGGGGATCATCTATTCATGATAGTCAATTTACGCTAGCAGATAGTGGCTATTCATCATATTTTTCTGGTAACAGTGCTTTTGAAGATGGGGTGTCAGTTGCACTTTCAACTTATGCTTCACATGGAGATCAATCACTTTGTATGAAAGCTGAAGGGGACAAACTGGTTACAAGTTACCAAAATAATTTTCAGAACAATGATGCTCAGTTCAATATTGGCCAGGAGGTGAAACAGTTACCAGATCTTTTTCCTTCTGTGAAATGTAAGAGTTATGGATCTTTCCCATGTGAGGATAGTTATACAGTAATAACTTCTGATAGAGCCAATCATTATCAAGATACTATTAATGGAACTGCTAGTAAACTTCAAAGAAACATGGTCTATTTGACTGTAGACCAATGTTTGCCCCATGCCCATGCTTCCATTGCCGTTGAGCAGCAGTTTGGTTGTGTTAAGAGAGGAGGGACCGAAATGATTCAACATAACCGCATTGATTCTCATCATTCTAAACGAACTGCTGAGAATTTCCGTGTTGAGGACACTGATGTTTGTATCATTGAAGACAACAGTCATCCTGTGCCTACAAGTCAATCTGAAGCTGTTCGTAATTCCCTTAGTATATTTCAATCTTCCGGATATGTTGGTTCCCAACATTACGCGGTTGGAAGCACAAGGGTAAAGGCATGTGATGAGCGAAATATATTACAAGTTGCATTGCAGGATCTATCTCAACCAAAGTCAGAAATTAGTCTGCCAGTTGGATTGTTGGCGGTTCCTCTTTTGAGACATCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGCTTATATTGCTCAGGTGGAATACTTGCAGATGATCAGGGACTTGGGAAAACGGTGTCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAAAATTATCTGCATGCCCCAATGCCCAAAATGGTGAATTGGAAACTTTGAATCTGGATGGAGAGGATGATGGTCTTCCTCAGAGCAGTTTGTTAAAGAAGGAATCTGATTCATGCGGAGACATGTCAATTAGAGATCCAATCAAGAGCAAGAGTTTATCTTTGCAAACAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTCTGCCCCACTAGCGTCCTGCGTCAATGGGCTGAGGAGTTGCACAATAAGGTAACTAGCCAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACGAAAGACCCTCATGAGGTGGCCAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAACAGCCGCTAGCTGACAAAGAAGATGAAGAGAAGGGAATATTTGAAGATTCTGGGGTACCAAATAGGAAGAGGAAAAACCCTTCTAATTCTAGTAAAAGTGGCAAGAAGCGATTGGACAACGCATTGCTTGAGGCTGCTGCTCGCCCTCTTGCAAAGGTATCATGGTTTAGGGTTGTCCTGGATGAGGCTCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTCGGGTCTTCGTGCTAAGCGCAGATGGTGTTTGTCAGGGACCCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTGAGATATGCCCCTTATGACATTTATACATCATTCTGTTCTATGATTAAGAATCAGGTCAGCAGAAATCCTACAAAAGGGTATAAAAAGATACAAGCCGTCCTAAAGACAATAATGCTACGTCGGACCAAAGGAACATTTCTTGATGGGGAGCCTATTATATCCTTGCCACCTAAATTTGTAGAGCTTAAAAAAGTTGAGTTTTCAATGGAGGAGCGTGATTTCTATTCCAAACTGGAGGCTGATTCTCGTGCGCAGTTTCAGGAATATGCTGATGCTGGAACTGTAAAACAAAATTATGTCAACATTTTGCTTATGCTTTTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTTAAGCGTTACAATTCCAACACTCTATGGAGATCTTCTGTCGAGATGGCAAAAAAGCTTCCCCAGGAAAAACAAGTATCCCTTCTTAAGTGTTTGGAGGCTTCCCTGGCTCTCTGTGGAATCTGTAATGATCCTCCTGAAGACGCCGTTGTTTCAGTCTGCGGTCATGTCTTCTGTAGCCAGTGCATTTCGGAACATCTTACCGGTGATGACAATCAGTGTCCTGCTGCAAATTGCAAAAGTCGACTCAGCATGTCTACTGTTTTTGCGAAAGCGATGCTCAACGGTTGTATGTCTAACCAGGGTTGTGATAGTTCACCTGGTTCGTCTGGTTCTGAAGTGGATGAATCTGAGCCTTGGTCTCGGAGTCAGCCTTATGATTCTTCTAAAATTAAGGCTGCACTTGAGGTTTTAAAGTCATTGAGTAGGGTACAGTGCATTACACCCAAAGTTATATCTGCACATGGTACTCCTGCAGAAAATACTGAATGCCCTGGGGTATCCTGTGATGTTAACAATGGGAAACGCTTGGAAGATATTCCTGAAAGTCAACATCTCTCTGGGAATAGCAGTTCTAATGGCACAGGAGAGAAAGCAATAGTATTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGCAATCTTCGATTCAGTATAGAAGACTTGATGGAACGATGTCTGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTACCAGAGGTTTCGGTTATGATTATGTCTTTGAAGGCTGCGAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTGGATTTATGGTGGAACCCTACTACTGAAGATCAAGCAATTGATAGAGCACATCGAATTGGGCAGACCCGTCCTGTGACTGTTTTGCGTTTAACCGTGAAAGATACCGTAGAAGATCGTATTTTGGCTTTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGCCGTCAGAGTCGCCTTACAGTAGATGATTTAAAATACCTGTTCATGATGTGA 4005 0.4187 MADDDVNFSELFDGDDDDNMCYIDLTTVMQVLNEDDDPLQSSPEDFSLQNGSSGESGVHDSFQLQNVCQMLEEEPHVSRLEVDSATDCSPFCSDVSDSGAKDSVHFSANPVLEREHENQGLPSQACSSTEKTGLSKFETSSFGMETSFPEAYSNNVSVCQDYLNKSMWKSGNERQFKHVGEDVESEHASHSSIIENGDLNFEDCVEDAVRGAYGQQESDLCTSFQISDMEADDSLHASTSIDSALYQGSHFPSDLCGDYAYPNYHQGGTYDRSFANDPTLRFIPNGIGSKSWTNKEMMTNLKAENMEFCTDMAQISGGMHSVNTGGSSIHDSQFTLADSGYSSYFSGNSAFEDGVSVALSTYASHGDQSLCMKAEGDKLVTSYQNNFQNNDAQFNIGQEVKQLPDLFPSVKCKSYGSFPCEDSYTVITSDRANHYQDTINGTASKLQRNMVYLTVDQCLPHAHASIAVEQQFGCVKRGGTEMIQHNRIDSHHSKRTAENFRVEDTDVCIIEDNSHPVPTSQSEAVRNSLSIFQSSGYVGSQHYAVGSTRVKACDERNILQVALQDLSQPKSEISLPVGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPKLSACPNAQNGELETLNLDGEDDGLPQSSLLKKESDSCGDMSIRDPIKSKSLSLQTKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPLADKEDEEKGIFEDSGVPNRKRKNPSNSSKSGKKRLDNALLEAAARPLAKVSWFRVVLDEAQSIKNHRTQVARACSGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYAPYDIYTSFCSMIKNQVSRNPTKGYKKIQAVLKTIMLRRTKGTFLDGEPIISLPPKFVELKKVEFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNTLWRSSVEMAKKLPQEKQVSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCSQCISEHLTGDDNQCPAANCKSRLSMSTVFAKAMLNGCMSNQGCDSSPGSSGSEVDESEPWSRSQPYDSSKIKAALEVLKSLSRVQCITPKVISAHGTPAENTECPGVSCDVNNGKRLEDIPESQHLSGNSSSNGTGEKAIVFSQWTRMLDLLEVCLKQSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03737 1334 MobiDBLite consensus disorder prediction 652 671 - -
Aip03g03737 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 914 1333 IPR027417 -
Aip03g03737 1334 SMART ultradead3 580 896 IPR014001 -
Aip03g03737 1334 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1156 1329 IPR001650 -
Aip03g03737 1334 Pfam Zinc finger, C3HC4 type (RING finger) 1022 1058 IPR018957 GO:0046872
Aip03g03737 1334 ProSiteProfiles Zinc finger RING-type profile. 1022 1061 IPR001841 -
Aip03g03737 1334 CDD DEXDc_SHPRH-like 584 906 - -
Aip03g03737 1334 Gene3D - 679 769 IPR038718 -
Aip03g03737 1334 Gene3D - 795 907 IPR038718 -
Aip03g03737 1334 SMART ring_2 1022 1060 IPR001841 -
Aip03g03737 1334 Pfam SNF2-related domain 604 983 IPR000330 GO:0005524|GO:0140658
Aip03g03737 1334 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 513 1333 - -
Aip03g03737 1334 MobiDBLite consensus disorder prediction 35 57 - -
Aip03g03737 1334 Gene3D - 921 1333 IPR027417 -
Aip03g03737 1334 MobiDBLite consensus disorder prediction 760 795 - -
Aip03g03737 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1015 1073 IPR013083 -
Aip03g03737 1334 MobiDBLite consensus disorder prediction 760 780 - -
Aip03g03737 1334 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Aip03g03737 1334 Gene3D - 554 643 IPR038718 -
Aip03g03737 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 906 IPR027417 -
Aip03g03737 1334 Pfam Helicase conserved C-terminal domain 1175 1276 IPR001650 -
Aip03g03737 1334 SUPERFAMILY RING/U-box 1019 1072 - -
Aip03g03737 1334 SMART helicmild6 1193 1276 IPR001650 -
Aip03g03737 1334 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 599 868 IPR014001 -
Aip03g03737 1334 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 513 1333 - -
Aip03g03737 1334 ProSitePatterns Zinc finger RING-type signature. 1037 1046 IPR017907 -
Aip03g03737 1334 CDD SF2_C_SNF 1179 1286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03737 Aip-Chr3 119542990 119551315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03737 475 1333 RAD5 or RAD16-like Gene Family AT1G61140 60.606 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip03g03737 SNF2_N 6.8e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03737 - - gmx:100802436 1741.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03737 03 119542990 119551315 Aip03g03737 03 119542990 119551315 ECH