LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g03710	ATGGCCCCTTTTGCAAACCCACTTTCATTTAACTTCACAAGCTTTAAGGATGGTGATGTTAATGTAGAAGAAGATGCTGCTGTTGTAAGAGAAGCTATCCAAATCACCTTGAACAGCATGGACCAAAACAACAACTACAGCGTTGGCCGTGTCACCAGCAAATCACTGATTCAGCTTTGGGACAAGAATTCTGGTCAGCTCACTGACTTCATTACCACATTTTCCTTTGTTATTTACTCACAAAAGTCTAGTTATGGAGATGGAATGGCTTTCTTCTTGGCTGATCCAAATCTCCCACTTCTGCATCATGTTACACAAGGTGGTGGCCTTGGCCTTGTAGATGGCAACAGAGTACTGAATTCAACTCAGCATTCATTCGTCGCCTTGGAGTTTGACACCTTCCACAATCCATGGGACCCTCAAGAGGATTATGTCTCATACAAGGTTGATCTGAGAGACCACTTGCCGGAGCACGTTATTGTTGGCTTCTCTGCTGCTACAGGGAGGTTGTTTGAGGTGAATACTCTCAAGTCTTGGTCATTCAGTTCAAGTTTGGATATTCTTGAGAATGTCAGAAATCCGATGACAGCACCGGCAGCATCACCAACTCCTAGTCCTGATTCTGAAAAGGGGAACAAGTTAAGACTGTTGGTGGGGATTGGAATTGGTGCAGCCTTGATTCTTAGTTTGTTAGTTTGCGCTTTAATATTGTGGAAGAAAAGTAGAGGGAAAAAAGAGGACTTAACTTTTGATCTGACCATGGATGATGAATTCCAAAAAGGCTCTGGACCAAAGAGGTTTGGCTACAATGAACTTCGAAGTGCAACTAACAAATTTTCAGATCCGAATAAGCTTGGTCAAGGTGGTTTTGGCAGCGTGTACAAAGGTTATCTGAAGAACTCAAACACCAATGTTGCCATCAAGAAGATTTCAAGAGAGTCTAGCCAAGGGATAAAGGAATATGCAACTGAAGTGAAGATCATTAGCCAACTGAGACATAGAAATCTAGTACAACTCATAGGTTGGTGCCACAGGAAGAATGATCTACTCCTCATATATGAGTTCATGCCAAATGGAAGCTTAGATTCACATTTATATGGCGGAAAAAGCCTCTTGACTTGGCCAACAAGGTACAACATAGCTCTGAGCCTGGCTTCAGCATTGCTTTACCTACAAGAAGAATGGGAACAATGTGTGATTCACAGGGACATCAAACCAAGCAACATAATGTTGGATTCATGCTTCAATGCAAAGCTTGGTGATTTCGGTCTGGCAAGGCTAGTGGATCATGAGAAAGGTTCAAGAACCACGCTAATCGCAGGAACAAGAGGCTACATTGCACCAGAATATGCTACTTCAGGAAAGGCTACCAAAGAAGCTGATATATACAGCTTTGGAGTTGTGCTATTGGAGATTGCAAGTGGAAAGAAACCAATTATTGGGCTAGATTCCAACAAGGAGGACATAATAACTGTTGTTGAGTGGGTCTGGGAGCTATATGGAATGGGAAAGTTGCTTGAAGCAGTGGACCCAAAGCTATGTGGAGAATTTGATGAGAATCAAATGGAGAGCGTGCTTGGAGTTGGACTTTGGTGTGTTCATCCAGATTACAAATTCAGGCCATGCATGAGGCAAGTCATCCAAGTTCTTCAATTTGAGGCTCCTTTACCAATTCTCCCAGAAAAGATGCCAGTGCCAACATATCTTCCTCCAGATATAAGAGCAATCTTTCGTTCAATTTCACCTCATTTTGCAATTGACACAACGGAATATTGCATGGGTGACTAG	1788	0.4256	MAPFANPLSFNFTSFKDGDVNVEEDAAVVREAIQITLNSMDQNNNYSVGRVTSKSLIQLWDKNSGQLTDFITTFSFVIYSQKSSYGDGMAFFLADPNLPLLHHVTQGGGLGLVDGNRVLNSTQHSFVALEFDTFHNPWDPQEDYVSYKVDLRDHLPEHVIVGFSAATGRLFEVNTLKSWSFSSSLDILENVRNPMTAPAASPTPSPDSEKGNKLRLLVGIGIGAALILSLLVCALILWKKSRGKKEDLTFDLTMDDEFQKGSGPKRFGYNELRSATNKFSDPNKLGQGGFGSVYKGYLKNSNTNVAIKKISRESSQGIKEYATEVKIISQLRHRNLVQLIGWCHRKNDLLLIYEFMPNGSLDSHLYGGKSLLTWPTRYNIALSLASALLYLQEEWEQCVIHRDIKPSNIMLDSCFNAKLGDFGLARLVDHEKGSRTTLIAGTRGYIAPEYATSGKATKEADIYSFGVVLLEIASGKKPIIGLDSNKEDIITVVEWVWELYGMGKLLEAVDPKLCGEFDENQMESVLGVGLWCVHPDYKFRPCMRQVIQVLQFEAPLPILPEKMPVPTYLPPDIRAIFRSISPHFAIDTTEYCMGD	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g03710	595	CDD	STKc_IRAK	285	551	-	-
	Aip03g03710	595	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	399	411	IPR008271	GO:0004672\|GO:0006468
	Aip03g03710	595	Gene3D	-	145	192	-	-
	Aip03g03710	595	PANTHER	-	144	584	-	-
	Aip03g03710	595	PANTHER	-	4	142	-	-
	Aip03g03710	595	Gene3D	Phosphorylase Kinase; domain 1	264	355	-	-
	Aip03g03710	595	ProSitePatterns	Protein kinases ATP-binding region signature.	285	309	IPR017441	GO:0005524
	Aip03g03710	595	CDD	lectin_legume_LecRK_Arcelin_ConA	8	185	IPR001220	GO:0030246
	Aip03g03710	595	SUPERFAMILY	Protein kinase-like (PK-like)	263	573	IPR011009	-
	Aip03g03710	595	PANTHER	L-TYPE LECTIN-DOMAIN RECEPTOR KINASE	144	584	-	-
	Aip03g03710	595	PANTHER	L-TYPE LECTIN-DOMAIN RECEPTOR KINASE	4	142	-	-
	Aip03g03710	595	Gene3D	Transferase(Phosphotransferase) domain 1	356	570	-	-
	Aip03g03710	595	ProSiteProfiles	Protein kinase domain profile.	279	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03710	595	Pfam	Legume lectin domain	8	145	IPR001220	GO:0030246
	Aip03g03710	595	Pfam	Protein kinase domain	282	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03710	595	SUPERFAMILY	Concanavalin A-like lectins/glucanases	7	185	IPR013320	-
	Aip03g03710	595	Gene3D	-	6	144	-	-
	Aip03g03710	595	SMART	serkin_6	279	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g03710	Aip-Chr3	119174045	119175997	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g03710	3	568	Receptor kinase-like Gene Family	AT5G10530	42.631	2.18e-160	472

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Aip03g03710		Pkinase	3.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g03710	-		-	gmx:100814713	705.671