LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g03701	ATGGTTCAGTACTATTGTGAAAAGAGTTTCTTGCTTGCTTCTTTTCATGTAATATTAGTTGCAAGTATTGCAACTATATCACATGCACAAGAACCACTGGCCTTCAACTACGATCAATTCGCCGACAGAGGAGATACCTTGTATACTTCCGGTGATGTCTATGATGATAATGGATCCCTTCAACTCACGGAGCAGAAGAAAGATAGCTTCGGCAGAGTCACATATTACAAACAGTTTCACCTTTGGGACAACAACACAGGCAAGGTCACAGATTTCACAACCCATTTCACTTTTTCCATCAACACCCCAAACAAATCCTACGATGGCGATGGCATCACCTTCTACCTAGCACAGCCCAGTTTGCCAGTCCCTGATCCAAGAGATGGCAGTGGCATTGGTCTCCTGAGCCGTGATCAACTCTATACTCCAAACTACACAAAAGAACATCCCTTTGTGGCAGTGGAATTTGACACTTTTTCCAATGATTGGGATCCTCCGTTTGACCATGTTGGTATTGATATAAGAGATATCAGGGGTACTTACACAACACAATGGTTCAGTAGCAGGGATGAGAGAGGTTATGATGCTGTTATCACTTACAATTCTAGTTCCAACAATCTGAGTGTGGCTTTCACAGGGTACAAGGATAATGTCACAAAAATTGAGCAGCACTTATCTTGTGAAGTTAATCTGAGAAATGTTCTGCCAGAATGGGTTGAGTTTGGATTCACTTCAGCAACGGGGTTCTACTTTGAGTATCACACCCTCAGCTCATGGTCCTTCAACACTAGTTTGAGCACTCATGAAGCAAATGACCAGAATAGAAGCAAGAAAGGCTTGGTGATAGGGCTAGGTGCTGGTGCAGGTGTTTTAATATGTGTTTTAATGCTGGCTTGTTTTATGGGATGGAAGCTGAGGAGCAGAAAAAGGAGAGACAGTTTTGATGTTGCTATGGACAGAGATTTTGAAAGAGGCACTGGACCCAGGAGGTTTTCTTATGAAGAACTTTCTAGAGCAACTAATAATTTTGCAAAGGGACATAAAATTGGAGAGGGAGGTTTTGGTGGAGTTTACAAAGGATTCTTAAGAGATTTGAACATCCATGTTGCCATTAAGAGGATATCTCAGGGATCACAACAAGGGGTGAGAGAGTATGCATCGGAAGTCAAGATTATTAGCCAACTGAGGCACAAGAATTTGGTTCAGCTCATTGGATGGTGTCACCAGAAGAATGACCTGCTGTTGATTTATGAGTTCATGGAAAATGGAAGCTTAGATTCCTATATATTCAAAGGTAAAAGCTTGTTGACATGGGAAGTAAGATATAACATTGCTAGAGGCTTGGCTTCATCTTTATTGTACTTGCATGAAGAGTGGGAACAATGTGTGCTTCATAGGGACATCAAACCCAGCAATGTTATGTTGGATCCTAATTTCAATGTGAAGCTTGGAGATTTCGGGTTAGCAAGACTGATGGACCACGGGACAGAATCGAAAACGGCGAGTTTAGCTGGAACAATGGGATATCTGGCTCCTGAAGCTGCCACACGAGGCAAGGCAAGCAAAGAGTCAGATGTGTACAGTTTTGGAGTTGTTGCATTGGAGATAGCTTGTGGAAGAAGGATCATTGAACAAAATCTAATCGCAAATCAGATCCACTTGGTGGATTGGGTTTGGGAACTGTATCCCACAGGTAATCTTCAAGAAGCAGCGGATCCAAGATTATATGGTGTTTTTGATAAACAAGAAATGGAGAGGTTAATGATTGTTGGACTTTGGTGTACTCTAACTGATTACACTATGAGGCCTACGATAAGGCAAGTGGTTCTTGTGCTTAACTCTGAAGTTCCATTGCCCACTCTCCCATCACAACTTCATTCTTCCAACTATTTCGTCCCAAGGACAAGTTCTGCTTCTGGAAATAACCAAAGCCATCCTTCAACTTCAAGCAATAGCTCTCTCACCACGGCGTCTTCACAGTCTAGCACCACTGCAACTTCAGAATCCTCTAAACTTCTAGGAACATGA	2028	0.4231	MVQYYCEKSFLLASFHVILVASIATISHAQEPLAFNYDQFADRGDTLYTSGDVYDDNGSLQLTEQKKDSFGRVTYYKQFHLWDNNTGKVTDFTTHFTFSINTPNKSYDGDGITFYLAQPSLPVPDPRDGSGIGLLSRDQLYTPNYTKEHPFVAVEFDTFSNDWDPPFDHVGIDIRDIRGTYTTQWFSSRDERGYDAVITYNSSSNNLSVAFTGYKDNVTKIEQHLSCEVNLRNVLPEWVEFGFTSATGFYFEYHTLSSWSFNTSLSTHEANDQNRSKKGLVIGLGAGAGVLICVLMLACFMGWKLRSRKRRDSFDVAMDRDFERGTGPRRFSYEELSRATNNFAKGHKIGEGGFGGVYKGFLRDLNIHVAIKRISQGSQQGVREYASEVKIISQLRHKNLVQLIGWCHQKNDLLLIYEFMENGSLDSYIFKGKSLLTWEVRYNIARGLASSLLYLHEEWEQCVLHRDIKPSNVMLDPNFNVKLGDFGLARLMDHGTESKTASLAGTMGYLAPEAATRGKASKESDVYSFGVVALEIACGRRIIEQNLIANQIHLVDWVWELYPTGNLQEAADPRLYGVFDKQEMERLMIVGLWCTLTDYTMRPTIRQVVLVLNSEVPLPTLPSQLHSSNYFVPRTSSASGNNQSHPSTSSNSSLTTASSQSSTTATSESSKLLGT	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g03701	675	Gene3D	Phosphorylase Kinase; domain 1	328	419	-	-
	Aip03g03701	675	SUPERFAMILY	Concanavalin A-like lectins/glucanases	33	270	IPR013320	-
	Aip03g03701	675	PANTHER	LECTIN RECEPTOR KINASE	20	643	-	-
	Aip03g03701	675	Gene3D	Transferase(Phosphotransferase) domain 1	420	633	-	-
	Aip03g03701	675	Gene3D	-	31	279	-	-
	Aip03g03701	675	Pfam	Legume lectin domain	34	275	IPR001220	GO:0030246
	Aip03g03701	675	ProSitePatterns	Legume lectins beta-chain signature.	152	158	IPR019825	-
	Aip03g03701	675	CDD	STKc_IRAK	349	613	-	-
	Aip03g03701	675	MobiDBLite	consensus disorder prediction	632	675	-	-
	Aip03g03701	675	ProSitePatterns	Legume lectins alpha-chain signature.	235	244	IPR000985	-
	Aip03g03701	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Aip03g03701	675	SUPERFAMILY	Protein kinase-like (PK-like)	327	635	IPR011009	-
	Aip03g03701	675	ProSitePatterns	Protein kinases ATP-binding region signature.	349	372	IPR017441	GO:0005524
	Aip03g03701	675	ProSiteProfiles	Protein kinase domain profile.	343	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03701	675	SMART	serkin_6	343	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03701	675	Pfam	Protein kinase domain	344	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g03701	675	PANTHER	-	20	643	-	-
	Aip03g03701	675	CDD	lectin_legume_LecRK_Arcelin_ConA	33	265	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g03701	Aip-Chr3	119127995	119130118	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g03701	9	630	Receptor kinase-like Gene Family	AT5G10530	44.654	2.48e-171	503

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Aip03g03701		Pkinase	3.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g03701	-		-	gmx:100783420	823.542