Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03665 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAAGGATCATATAGTTGAAGGTCAAGTTTATAGAATAGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCAAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGAGAAATTTGTGAAAATGATTATGCTTGAATTAAGTTCAAAAAATGCGATGGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTATTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAACCACTGTTTATTGCAAATGAGGGTAAAGTTGTTTCCTTGAAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTAAAGATCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAATGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGATATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACGTAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGAGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCATAAGAAATCATGTGCTGACTTGTTTACCGAGGTTCAAAGAGATGCAAGTCTTGTATATAGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTTCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCCCGATTATGATACTGATGATGAGTCTACTCCAAAAAAGGAGCCTGATTTACACAAATCGGTTTCCTGTGGAGAAGGGGATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGTTGGTGAGTCTTCTGGGATTTTATCTAAATCCCCAGTTCTTATAGATTTTCTGGCTGGAAAACAGCCTGCTGTTTTTCGAGGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAAGATGAGAAAAGACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTAAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTATTGATGCACCTTCCCAATATGAAGAGAAACTTATTCATGAAAATGATGTTATCACCTCCAATGGCAAGAGGAATTTGAATCCCCAATTTGAAGAGGCGGCTACTGATGCAGATGGGCGTGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1809 0.3809 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCEKIQATVKKPLLNRFKDHIVEGQVYRIAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTKDYDFLVDVIGLLTSVGEEKEYAKEEKFVKMIMLELSSKNAMALFGDYVNQVNHFLASGYVEQPIVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLKDDFMRLTRKCTIKDLQDNNEEGSFIIFGTIQCIVEDGGWWYSACVCGKDIYPQNGAYYCDFCLKHVTNVTPRFKIKITVEDHSGESIFLLFDREASYLHKKSCADLFTEVQRDASLVYRDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDTDDESTPKKEPDLHKSVSCGEGDIGIKKESSKTFIKSEKVVGESSGILSKSPVLIDFLAGKQPAVFRGTEFASLINGEHGKDEKRPSNDTVSDDLSAKLDILLSSPEKETQEVLSHVIDAPSQYEEKLIHENDVITSNGKRNLNPQFEEAATDADGRGFKIAKVNGV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03665 602 CDD RPA1_DBD_B_like 140 239 - -
Aip03g03665 602 Pfam Replication factor-A C terminal domain 287 374 IPR013955 -
Aip03g03665 602 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Aip03g03665 602 CDD RPA1_DBD_A_like 19 107 - -
Aip03g03665 602 SUPERFAMILY Nucleic acid-binding proteins 120 239 IPR012340 -
Aip03g03665 602 Gene3D - 114 248 IPR012340 -
Aip03g03665 602 Gene3D - 262 423 IPR012340 -
Aip03g03665 602 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 369 - -
Aip03g03665 602 PANTHER REPLICATION FACTOR A 1, RFA1 22 369 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip03g03665 602 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Aip03g03665 602 CDD RPA1_DBD_C 274 417 IPR013955 -
Aip03g03665 602 SUPERFAMILY Nucleic acid-binding proteins 271 420 IPR012340 -
Aip03g03665 602 Gene3D - 4 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03665 Aip-Chr3 118795398 118798267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03665 11 368 Core DNA Replication Machinery Family AT5G08020 24.603 2.33e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03665 - - adu:107471135 949.503