Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03605 ATGACAGGAATATCAGAAGTGTTGTATCAGCTGTACGCTAAAGCAATAGTGCTATTAGCATACATGCTCATAGAACTTGTCCTTCTTATTCAGTACCTCAAATCAGACAAACGCAGCAGCACCACAATCACCACCACTCAGTATCTCAGATTCATTGAAGAGAAGAACCCCACAATTCTCTACACCAAGAGCATGATGCAGCAACTGGATCCTGTTGAATGCAGAGTGTGCTTGAATGAGTTCCATGAAGGTGATCAATTGAGGAACCTCAAGTGTCACCACGCTTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAATCTTTTGCTACTTGCCCTCTTTGCAGGATCAAGCTGTTACCTGATTATGTTGTTGCAAAGTATCAGAATAATAACCATAATCATCATCAGAACAATATTACTGAGATATTTTTGGTGAGAAGCCGCCTCTCACTATATTGTTGGAGTCTTGGAGAGAAAACTCAACTAATAAAAGAAATTGCTTTCTTCTTAAAGAGGACACTATCTGTCTATCTCCAATAA 543 0.3959 MTGISEVLYQLYAKAIVLLAYMLIELVLLIQYLKSDKRSSTTITTTQYLRFIEEKNPTILYTKSMMQQLDPVECRVCLNEFHEGDQLRNLKCHHAFHRDCLDKWLQQSFATCPLCRIKLLPDYVVAKYQNNNHNHHQNNITEIFLVRSRLSLYCWSLGEKTQLIKEIAFFLKRTLSVYLQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03605 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Aip03g03605 180 PANTHER - 1 142 - -
Aip03g03605 180 SUPERFAMILY RING/U-box 64 123 - -
Aip03g03605 180 SMART ring_2 74 115 IPR001841 -
Aip03g03605 180 Pfam Ring finger domain 73 116 IPR001841 -
Aip03g03605 180 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Aip03g03605 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 142 - -
Aip03g03605 180 CDD mRING-H2-C3H2C2D_ZSWM2 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03605 Aip-Chr3 117052445 117053561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03605 16 116 C3H Transcription Factor Family AT5G45290 41.509 4.61e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03605 K16282 - gmx:102669811 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03605 03 117052445 117053561 Aip03g03605 03 117052445 117053561 ECH
Aip03g03605 03 117052445 117053561 Aip10g01348 10 22362273 22362841 PCT