Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03599 ATGAATTCTCCAACTTCACACTTTGTTCCCCCAAGAAGGATGGGAGTATATGATCCAATCCACCAGATTAGTATGTGGGAAGAGAATTTCAGAAGTAATGTTAGTTTAAGTGCATCAACGCTCTTAATTGATGATGCGGAGATTAAGTTTGACAATCAGTCAGAATATGCTTCTCATGGAATACCAGGAACATCTAAACAATATGACCAAGAAGCTAACAGACTTGCTGATAAGATACAGAGACGCCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGCGCAAAAAGGCCTATGTACAGCAACTAGAATCATGTCGCGTGAAGCTAATGCAGTTAGAGCAAGAGGTTGATCATGCAAAACAACAGGGATTACATATTGGTGGTACTGGATTGGGTTCTAATAGTTTGGGTTTTGCTGCCTCTTTAAATTCAGGAATAGCAAACTTCGAGATGGAGTATGGACGTTGGCTAGAAGAGCGGAATAGACATACCTTGGCACTTAGAAATGCTTTAAGTTCTCATATGGGTGACGTAGAACTCGGAGAACTTGTAGATGGCACAATGAACCACTATTTTAAACTCTTTGGCATGAAATCTGCTGCTGCAAAAGCTGATGCTTTCTACGTTATGTCCGGCATGTGGAAATCATCAGCCGAACGATTTTTCTTCTGGATTGGAGGCTTTCGCCCCTCAGAAATTCTAAAGATTCTGGTACCTAGGATTGAAACCATGACAGAGCAACAAAGGTCAGACATAAGCAACCTTGGAAAATCTTGTCAGCAAGCAGAAGATGCCCTTTCACAAGGCATGGACAAACTTCAACAAATGGTTTCAGAATCTGTAGCAGCAGGACAACTTGAAGAACAAACTAACACTCCAAACATGTCTACTGCAATGGAGAGATTGGCAGCTCTAGTGAGCTTTGTGAACCAAGAAACATTGCTGCAAATGTCTCGAATACTTACAAAACGGCAGGCTGCGAGGTGGCTTCTTGCCTTGGGGGAATATTTTCAACGCCTGCAAGCTTTGAGCTCTTTCTGGGCTAATCGTCCTTCCAAACCTGCTGAGTGCTTAATACCTTAG 1089 0.4252 MNSPTSHFVPPRRMGVYDPIHQISMWEENFRSNVSLSASTLLIDDAEIKFDNQSEYASHGIPGTSKQYDQEANRLADKIQRRLAQNREAARKSRLRKKAYVQQLESCRVKLMQLEQEVDHAKQQGLHIGGTGLGSNSLGFAASLNSGIANFEMEYGRWLEERNRHTLALRNALSSHMGDVELGELVDGTMNHYFKLFGMKSAAAKADAFYVMSGMWKSSAERFFFWIGGFRPSEILKILVPRIETMTEQQRSDISNLGKSCQQAEDALSQGMDKLQQMVSESVAAGQLEEQTNTPNMSTAMERLAALVSFVNQETLLQMSRILTKRQAARWLLALGEYFQRLQALSSFWANRPSKPAECLIP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03599 362 Pfam Seed dormancy control 168 240 IPR025422 GO:0006351|GO:0043565
Aip03g03599 362 Coils Coil 97 124 - -
Aip03g03599 362 Gene3D - 76 127 - -
Aip03g03599 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Aip03g03599 362 ProSiteProfiles DOG1 domain profile. 148 352 IPR025422 GO:0006351|GO:0043565
Aip03g03599 362 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 357 - -
Aip03g03599 362 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700|GO:0006355
Aip03g03599 362 Pfam bZIP transcription factor 77 112 IPR004827 GO:0003700|GO:0006355
Aip03g03599 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03599 Aip-Chr3 116836777 116839518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03599 1 357 Calmodulin-binding Proteins AT5G65210 60.705 1.81e-161 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aip03g03599 DOG1 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03599 K14431 - gmx:100780003 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03599 03 116836777 116839518 Aip03g03599 03 116836777 116839518 ECH
Aip03g03599 03 116836777 116839518 Aip10g01358 10 22583392 22588824 PCT