Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03590 ATGGCAGGAGGGAATAATAAGAGGAATCAAACAAGCCCAGTGGGAAGTCCAACATCAGGGAACATCTCAGATAGTTCTTCATCGAAGGAACAACAAGACAGGTTCCTCCCAATTGCAAACGTCAGCAGGATCATGAAGAAGGCGCTGCCGCCGAATGCCAAGATCTCGAAGGAGGCGAAGGAAACTGTTCAGGAGTGTGTGTCTGAGTTCATAAGCTTCATAACTGGTGAAGCTTCCGACAAGTGCCAGAGGGAGAAGAGGAAGACCATCAATGGTGATGATCTTCTTTGGGCCATGACTACGCTTGGTTTTGAGAACTATGTTGGACCCTTGAAGCTTTATCTCAACAACTATAGGGAAACTGAAGGGGACAAGACTTCCATGCCGGTTAATCATCTTCATCATCATCATTCTCCAGAACTCAATAATCATCATCATGGTGTTGCTGATTTTGCAGGTTTTAATGGTAATAATAATGATGGAGGGTTTTACTCTGTTGGGCCTCATCAAGTTCTGAATCACAGTACTATCACTACTGCGACTACTACTCCATCAAAGAGTTTCAATAATCATCATCAGAGTGTGGTTGATAATGTCAATGGTGATGCTGATGCTAATGCCAATGGTAATGATAATCGTAGGTTGATGATGCCATCAGACCTACGTAGTTATAGGGTTGAATGGTAG 687 0.4338 MAGGNNKRNQTSPVGSPTSGNISDSSSSKEQQDRFLPIANVSRIMKKALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGDKTSMPVNHLHHHHSPELNNHHHGVADFAGFNGNNNDGGFYSVGPHQVLNHSTITTATTTPSKSFNNHHQSVVDNVNGDADANANGNDNRRLMMPSDLRSYRVEW 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03590 228 SUPERFAMILY Histone-fold 32 132 IPR009072 GO:0046982
Aip03g03590 228 Gene3D Histone, subunit A 22 146 IPR009072 GO:0046982
Aip03g03590 228 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 190 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aip03g03590 228 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Aip03g03590 228 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 12 190 - -
Aip03g03590 228 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aip03g03590 228 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Aip03g03590 228 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Aip03g03590 228 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Aip03g03590 228 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03590 Aip-Chr3 116699736 116700639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03590 27 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.139 4.97e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip03g03590 CBFD_NFYB_HMF 3.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03590 K08065 - gmx:100797721 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03590 03 116699736 116700639 Aip03g03590 03 116699736 116700639 ECH