Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03529 ATGGACTTCGACGAGTACGAATACTTGGAGAAGACAGTGGAGGACCACGACGACAAAGACTCCTCTAAGCTCAAGAAGAAGGACTCCACCGACAGAACAGATAGGTCTTACCGCAAGCGTGACGTCGACGACGATCTCGACGCTGCCGACGACAAGCGCACCAAGCGCTCCAGGCACGACGACGACGACACCACTGCCTCCAAGAGGGACCGTGACCGTGACCGCGAACGGTCCAGCCGTGACAGGGAGCGCCACCGCAGTGAGAGGGAGAAGGATAGGGATAGGGACGGGGAGAGGAGCAGCAGAGAAAAAGAGAAGGAGAGGGATCGGGATAAGGACAGAGAGAGGAGGGACAGAGACAGAGATAGAGATAGGGACAAGGAGAGGGAGAGGAGAGATAGGGAGAGAGAAAAGGAACGCGAGAGAAGGGAGAGGGAAAGGGAGAGGGAGAAGGAAAAGGAGAAAGAGAGAGAGGAGAGAGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGACAGAGACAGAGAAAGAGAACCAGATTTCGAATCTCGCGATGGCCGGAGGTTTAGGGATAAAAAAGAGGCTGCGGAGCCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCTTAAAAGCAACAGAGAGAGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTTAGAGATGTTCGTCTGATCATGGATAGAAACTCAAGACGTTCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTTTCTGGCCAGCTTCTTCTTGGTCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTACTGCTTCCACTGGAGCTGCTGGCGTAGCAGGACCATATGGTGCCATGGACAGAAAGCTGTATGTGGGCAATCTTCATTTCAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGGCCGGTGGAGGTTGTACAACTGCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCACAGAATTTAAACGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACTGATCATGTTGGGAGCCAAGATACAACTGCAAAATCTGCAGATCTTGATGATGATGAAGGTGGATTGGCTTTAAATGCACAATCAAGAGCATTGCTTATGCAGAAGTTGGCAGACCGCCATGGCCTTCCTGGAAGCAATGGGGTGCCTGCTGTGAATGGGGCTGTTCCTATTCAGCCAACCATGGGTTTGCCTATTGGTAATCCAGGTATAATACCTGCACCTGCTCTCCCAACTCAAATTTTGCCTACTCCAGTGGCAGAACCTGTAGGGAGCCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGATCCTAGCACCGAGACTGAGCCAGATTTTGATATAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCGGGTTTTGTATATTTGCGGTTTGAAACGGTGGAAGCAGCAAGCGCTGCACAACGGGCAATGCACTTGAGATGGTTTGCACGCAGATTGATTTCAGCTGTGTTCATGCAACCTCAGGTCTACGAAGCTAAGTTTAAAGGAGAAGACTGA 1728 0.489 MDFDEYEYLEKTVEDHDDKDSSKLKKKDSTDRTDRSYRKRDVDDDLDAADDKRTKRSRHDDDDTTASKRDRDRDRERSSRDRERHRSEREKDRDRDGERSSREKEKERDRDKDRERRDRDRDRDRDKERERRDREREKERERREREREREKEKEKEREERERSRRSRSRSERDRDREREPDFESRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTASTGAAGVAGPYGAMDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQNLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLALNAQSRALLMQKLADRHGLPGSNGVPAVNGAVPIQPTMGLPIGNPGIIPAPALPTQILPTPVAEPVGSPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHLRWFARRLISAVFMQPQVYEAKFKGED 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03529 575 SUPERFAMILY RNA-binding domain, RBD 477 563 IPR035979 GO:0003676
Aip03g03529 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 403 499 IPR029123 -
Aip03g03529 575 Gene3D - 306 402 IPR012677 -
Aip03g03529 575 MobiDBLite consensus disorder prediction 1 208 - -
Aip03g03529 575 SUPERFAMILY RNA-binding domain, RBD 309 387 IPR035979 GO:0003676
Aip03g03529 575 TIGRFAM SF-CC1: splicing factor, CC1-like family 101 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aip03g03529 575 CDD RRM1_RBM39_like 209 281 - -
Aip03g03529 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 556 IPR000504 GO:0003723
Aip03g03529 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 277 IPR000504 GO:0003723
Aip03g03529 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Aip03g03529 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 574 - -
Aip03g03529 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Aip03g03529 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Aip03g03529 575 PANTHER CC1-LIKE SPLICING FACTOR 1 574 - -
Aip03g03529 575 CDD RRM2_RBM23_RBM39 312 384 - -
Aip03g03529 575 SMART rrm1_1 209 281 IPR000504 GO:0003723
Aip03g03529 575 SMART rrm1_1 482 559 IPR000504 GO:0003723
Aip03g03529 575 SMART rrm1_1 311 384 IPR000504 GO:0003723
Aip03g03529 575 Gene3D - 477 574 IPR012677 -
Aip03g03529 575 CDD RRM3_RBM39_like 480 562 - -
Aip03g03529 575 Gene3D - 135 295 IPR012677 -
Aip03g03529 575 SUPERFAMILY RNA-binding domain, RBD 201 290 IPR035979 GO:0003676
Aip03g03529 575 Coils Coil 124 173 - -
Aip03g03529 575 MobiDBLite consensus disorder prediction 9 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03529 Aip-Chr3 115160017 115165520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03529 290 383 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 4.71e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03529 K13091 - gmx:100802446 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03529 03 115160017 115165520 Aip03g03529 03 115160017 115165520 ECH
Aip03g03529 03 115160017 115165520 Aip10g02281 10 102398313 102403499 PCT