Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03520 ATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCCGCGTCGACGTTTGGGCTTTCTTTGACGCTGCAATCGACGTCGCTTCCGCCGATAACGCCGATGAATTGAAGCGCCGCCGGGACGGAATCGTCGAGCGCCTTTACGCCGCTACTGCCACGCCTCCCCGGTGTCTGAATTGCGAAGCAAATGCCGTCGAAGCACACAATCAGCAAAACAAATCGTCAGAGGACGAGGATATGGATCCTTTTGGAGGCTTATTCGATGACGAGCAGAAGAAGATTCTAGAAATTAAGCACCAACTTGAAGATCCTCACCAGTCGGAAGATTCGTTGGCGGAGTTGCTACAGAATCTGGCGGACATGGATATTACATTCCAGGCTTTAGAGGAAACTGACATTGGGAGGAACGTGAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGCTGAAGGCACCTGGAGAACCTGCTACTGCTAGTACTGTCATTGGTGATGATGAAGATTCGCCTCAGCAGAGGAATCAACGAAATGGGCATCATCAGATTCCTGGTTTTGCATGCTCGCCAAATTCAGAGAATGGCAATTTTGAGTCTTCCGAAACAGAACCAAAACCAAAACCAATTCCTCGCAAAGAAGCTCTGCCAAAACCAGCTCAAAAATCACCATCACCGTTACCATCGGTTCCCACTCCTCCTCCTCCTCAAAACAGACAAAAAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCAGCAAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACCTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGTTTTCTTTGGAAAGAACAAAGGCGGCATGGGTTCTCAGGGAAGGAAATGGTGA 969 0.4788 MDLDDFRSILDTARVDVWAFFDAAIDVASADNADELKRRRDGIVERLYAATATPPRCLNCEANAVEAHNQQNKSSEDEDMDPFGGLFDDEQKKILEIKHQLEDPHQSEDSLAELLQNLADMDITFQALEETDIGRNVNRLRKHSSSEVRRLVKLLVRKWKEIVDEWVKLKAPGEPATASTVIGDDEDSPQQRNQRNGHHQIPGFACSPNSENGNFESSETEPKPKPIPRKEALPKPAQKSPSPLPSVPTPPPPQNRQKESNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNVFFGKNKGGMGSQGRKW 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03520 322 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Aip03g03520 322 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 172 IPR035441 -
Aip03g03520 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 322 - -
Aip03g03520 322 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 175 IPR035441 -
Aip03g03520 322 MobiDBLite consensus disorder prediction 303 322 - -
Aip03g03520 322 MobiDBLite consensus disorder prediction 174 268 - -
Aip03g03520 322 Coils Coil 111 131 - -
Aip03g03520 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 322 IPR044790 -
Aip03g03520 322 SMART TFS2_5 94 165 IPR003617 GO:0005634
Aip03g03520 322 MobiDBLite consensus disorder prediction 194 219 - -
Aip03g03520 322 CDD TFIIS_I 91 164 - -
Aip03g03520 322 Coils Coil 264 291 - -
Aip03g03520 322 MobiDBLite consensus disorder prediction 238 255 - -
Aip03g03520 322 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03520 Aip-Chr3 114967374 114969865 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aip03g03520 Med26 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03520 - - aip:107630962 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03520 03 114967374 114969865 Aip03g03520 03 114967374 114969865 ECH
Aip03g03520 03 114967374 114969865 Aip10g02303 10 103129109 103133103 ECH
Aip03g03520 03 114967374 114969865 Aip08g03215 08 122893520 122896894 PCT