Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03501 ATGAATGTGATGGCTTGTGAGCAATTTGATTACTCATTCAGCCCTCCCCCCATGAACCAATTACTCCATGAATATATCTTACAAGATGCATTTCCAAGCCAATCAGATGATCACTTATTATCTTCTCCAAACATCATCTATGATGATGTGTTTGATGAAATGCTTGAGCAAGAGGCCCTGAATGGATTCCTCCATCCAGAAAACTCACAGCAGCCAGACTTTGATTTCATTGGCCATAATGTTACAATGGCTATTGAGTCTGAACTGTGCCAAGAAAACATCCCTATAGCCCAAGAAGAGGAGATGCATGTCTCAAATGAAGAAGGAGATGCATATTTGATGGGAATTCAAGCAGAGCTAATGGGAGAAACTAGTTTGGGAGATCTATTGCTATTAGGAGCTGAAGCTGTTGAAGCACAGAACTTTGTTCTTGCTCTGGACATAATAGAGAGAATTAACAATAATGCATCATCATCATCTTTTTTGGAAAATGGTGATTCTTTATTGAACAGGTTGGCTCTATTCTTTGCTCGGGGTCTGTATTATAAGAGTATAAATGCTCCTCAAGTGCAGTCTGATCCTGTTTCAACACACAACAATGCCTTCGGTGTGTTTCAGATACTCCAGGAACTCTCTCCCTATGTAAAATTCGCTCACTTCACTGCTAATCAAGCCATCTTTGAAGCCACAGAAGGTTCTGAGGATGTTCATGTCATTGATTTTGACATCATGGAGGGGATCCAGTGGCCACCATTGATGATGGACCTTGCAATGAGGAAGAACACTTGTCTTAGAGTAACAGCTGTTGTTGCAGATCAGCAGAGTGTAGCATATGTCCAGCAAACAGGAAGAAGGCTAAAAGAGTTTGCAGATTCTATCGATTTTCCTTTCGCTTTCGATCAGATAGTGATGGTTGGGGAGGAAGATCTTCAAAGAGTTGAACTTGGTCATACAGTTATAGTCAACTGTATGATACACCAATGGATGCCGAACAGAAGCTTCCCATTGATCAAAACATTCCTTGATGGTGTAAGCAAGTTATCACCAAGGCTTGTTGTTTTGGTGGAGGAAGAACTTTTCAACTTTGCTAGGCTAAAATCCATGTCGTTTGTGGAGTTCTTCTGTGAGGCTTTGCACCACTACACTGCACTTAGTGATTCACTTGCTAGTAGTTTGTTGGGTAGGCAGAAGATGGAGCTAACCATGATAGAGAAAGAAGTTATGGGGCAAAGGATTTTGGACAGTGTGAAGCAGTTTCCATGTGAGAGAGAAGAAAGAATGGTGTGGGAAGAAGGGTTTTACTCCTTGAAGAGGTTCAAGCGTGTTGCTATGAGTAGCTGTAATGTTTCACAGGCTAAGTTCTTGGTGAGCTTGTTTGGTGGAGGCTATTGGGCAGGACTCTAG 1404 0.4174 MNVMACEQFDYSFSPPPMNQLLHEYILQDAFPSQSDDHLLSSPNIIYDDVFDEMLEQEALNGFLHPENSQQPDFDFIGHNVTMAIESELCQENIPIAQEEEMHVSNEEGDAYLMGIQAELMGETSLGDLLLLGAEAVEAQNFVLALDIIERINNNASSSSFLENGDSLLNRLALFFARGLYYKSINAPQVQSDPVSTHNNAFGVFQILQELSPYVKFAHFTANQAIFEATEGSEDVHVIDFDIMEGIQWPPLMMDLAMRKNTCLRVTAVVADQQSVAYVQQTGRRLKEFADSIDFPFAFDQIVMVGEEDLQRVELGHTVIVNCMIHQWMPNRSFPLIKTFLDGVSKLSPRLVVLVEEELFNFARLKSMSFVEFFCEALHHYTALSDSLASSLLGRQKMELTMIEKEVMGQRILDSVKQFPCEREERMVWEEGFYSLKRFKRVAMSSCNVSQAKFLVSLFGGGYWAGL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03501 467 ProSiteProfiles GRAS family profile. 117 467 IPR005202 -
Aip03g03501 467 Pfam GRAS domain family 128 460 IPR005202 -
Aip03g03501 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 463 IPR005202 -
Aip03g03501 467 PANTHER OS12G0162700 PROTEIN 5 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03501 Aip-Chr3 114727845 114729248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03501 208 458 GRAS Transcription Factor Family AT1G55580 37.050 3.07e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g03501 GRAS 8.6e-67 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03501 - - gmx:100804613 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03501 03 114727845 114729248 Aip03g03501 03 114727845 114729248 ECH