Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03500 ATGGAGTTCCTTGACGACGACGACACGAGGCCTAGGTTCCTATTCCAATCTGGATCACAGCCACCGCCTTCATCCGCTGACGACCAATCCTACAACAAACCAACCAAGACACTACTCATTGTCACCGTCTCTGCCTCCGCCATCCTCCTCTTCCTCTCTATCTTCTACATCCAAGCTGAGCCATTCAAGTCCCTCCTCCTCTGGCTCGCCCTCTCCCTCCTCGTTGGACCTTTCGCCCCTCCTTCCCTCACCGCCGGAGATATCCGTGTAGGCCGGGGCTCCATCCTCGAATTCCCCGACCAACAAACCCTCGCCGAAGACGATGACAACAAGAAGAAATATCAGCGCCGATCCAAATCCCGCAGATCCGACGAAGTCCAATCTGTTGTCGCTCCGGTCGTAAAATCGCCGGAGCGGGAGGCTGAGAAGATCCGAGCCAACGAAAACGGAAACGGAAATGGCGTTGTGTCGGAGAAGGAGTGGAGTGAAGAGGATGTGGAGATTCTGAAGAAGCAGATGACGAAGCATCCCGTCGGGAAGCCAGGGCGGTGGGAGGCGATAGCGGCGGCGTTTGGCGGGAGACACGGAGCGGAGAGCGTGATAAAGAAGTCGAAGGAGTTGGCGGAGAAGAAGGTGGACGATTCGGAGTCGTACGCGCAGTTCCTGAAGAAGAGGAAGCCGGTGGACAAGAGAGTGGTGGAAGAGGCGGGGGAGGAGGAGGAGAAGAACGGTGGTTCTGGTGCCGTTGGTGACGGGACGTGGAGTTCAGGCGAGGACATTGCGCTGCTGAATGCTCTGAAAGCGTTCCCGAAGGAGGCTGCGATGAGATGGGATAAGGTGGCTGCTGCGGTTCCCGGGAAGTCAAAGGCCGCTTGCATGAAAAGAGTTACTGAATTGAAGAAAGGGTTTCGGAATGCAAAAGCTGCTTCTGCCGATAAGAACATGAAGTTGATCGGATTACATGGAACAGGCTTGCCCACTCAGACAGCTATTCAGTTTATATACATACATCAAGAACGACAGAGTAACATATAA 1035 0.5459 MEFLDDDDTRPRFLFQSGSQPPPSSADDQSYNKPTKTLLIVTVSASAILLFLSIFYIQAEPFKSLLLWLALSLLVGPFAPPSLTAGDIRVGRGSILEFPDQQTLAEDDDNKKKYQRRSKSRRSDEVQSVVAPVVKSPEREAEKIRANENGNGNGVVSEKEWSEEDVEILKKQMTKHPVGKPGRWEAIAAAFGGRHGAESVIKKSKELAEKKVDDSESYAQFLKKRKPVDKRVVEEAGEEEEKNGGSGAVGDGTWSSGEDIALLNALKAFPKEAAMRWDKVAAAVPGKSKAACMKRVTELKKGFRNAKAASADKNMKLIGLHGTGLPTQTAIQFIYIHQERQSNI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03500 344 ProSiteProfiles Myb-like domain profile. 252 300 IPR001005 -
Aip03g03500 344 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 310 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Aip03g03500 344 Gene3D - 246 314 - -
Aip03g03500 344 CDD SANT 160 194 IPR001005 -
Aip03g03500 344 CDD SANT 253 300 IPR001005 -
Aip03g03500 344 MobiDBLite consensus disorder prediction 13 31 - -
Aip03g03500 344 SUPERFAMILY Homeodomain-like 250 301 IPR009057 -
Aip03g03500 344 MobiDBLite consensus disorder prediction 1 31 - -
Aip03g03500 344 PANTHER TRANSCRIPTION FACTOR MAMYB 1 310 - -
Aip03g03500 344 MobiDBLite consensus disorder prediction 232 253 - -
Aip03g03500 344 Gene3D - 154 214 - -
Aip03g03500 344 MobiDBLite consensus disorder prediction 104 124 - -
Aip03g03500 344 MobiDBLite consensus disorder prediction 101 159 - -
Aip03g03500 344 SMART sant 250 302 IPR001005 -
Aip03g03500 344 SMART sant 157 210 IPR001005 -
Aip03g03500 344 SUPERFAMILY Homeodomain-like 155 197 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03500 Aip-Chr3 114725813 114727647 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip03g03500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03500 - - adu:107480279 559.296